View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_28 (Length: 315)
Name: NF11218_low_28
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 47924994 - 47925269
Alignment:
| Q |
17 |
agcaatcagccatgagacaagaagtgaggagagtaatggctgaaaagatgatgagagtgatagtccctgcaatccaacccaactgagcaacagcccatgc |
116 |
Q |
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| T |
47924994 |
agcaatcagccatgagacaagaagtgaggagagtaatggctgaaaagatgatgagagtgatagtccctgcaatccaacccaactgagcaacagcccatgc |
47925093 |
T |
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| Q |
117 |
caatgacaacactccagatcctattatagtcgtcactatgtgtgcactcgcagttatccatgttccttcatactcatattcatatacaatgatcaatgtt |
216 |
Q |
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| T |
47925094 |
caatgacaacactccagatcctattatagtcgtcactatgtgtgcactcgcagttatccatgttccttcatac------tcatataaaatgatcaatgtt |
47925187 |
T |
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| Q |
217 |
aaattaaccttatactaataacatgttaaaatgacaagaaaagataagaaataaatatatatattcaacaagatacaaacctgttc |
302 |
Q |
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| T |
47925188 |
aaattaaccttatactaataacatgttaaaatgacaagaaaagaaaagaaataa----agatattcaacaagatacaaacctgttc |
47925269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 47910950 - 47911121
Alignment:
| Q |
17 |
agcaatcagccatgagacaagaagtgaggagagtaatggctgaaaagatgatgagagtgatagtccctgcaatccaacccaactgagcaacagcccatgc |
116 |
Q |
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| T |
47910950 |
agcaatcagccagtaaaaaagaagtgaggagagtgatgagtgaaaagagtatgagaataaaactccctgcaatccaacccaattgtgcaacagcccatgc |
47911049 |
T |
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| Q |
117 |
caatgacaacactccagatcctattatagtcgtcactatgtgtgcactcgcagttatccatgttccttcata |
188 |
Q |
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| T |
47911050 |
caatgacaacactccagatcctattacagcagtcactatgtgtgcacttgcagtcacccatgttccttcata |
47911121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 47919764 - 47919934
Alignment:
| Q |
17 |
agcaatcagccatgagacaagaagtgaggagagtaatggctgaaaagatgatgagagtgatagtccctgcaatccaacccaactgagcaacagcccatgc |
116 |
Q |
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|||||||||| | |||| |||||||||||||||| ||| ||| |||| |||||| ||| |||||||||||| ||||| || |||||||||||||| |
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| T |
47919764 |
agcaatcagcaaggagaaaagaagtgaggagagtgatgagtgagaagagtatgagaacaatacaccctgcaatccagcccaattgtgcaacagcccatgc |
47919863 |
T |
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| Q |
117 |
caatgacaacactccagatcctattatagtcgtcactatgtgtgcactcgcagttatccatgttccttcat |
187 |
Q |
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| T |
47919864 |
caatgacaacactccagatcctatcacagcagtcactatgtgtgcactcgcagttacccatgatccttcat |
47919934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 47903911 - 47904022
Alignment:
| Q |
76 |
atagtccctgcaatccaacccaactgagcaacagcccatgccaatgacaacactccagatcctattatagtcgtcactatgtgtgcactcgcagttatcc |
175 |
Q |
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||||||||| | ||||| |||||||||||||| |||||||||| |||||||||||||| ||||||| || |||||||||||||||||||| ||| | || |
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| T |
47903911 |
atagtccctccgatccatcccaactgagcaacggcccatgccagcgacaacactccagaccctattacagccgtcactatgtgtgcactcgaagtgaacc |
47904010 |
T |
|
| Q |
176 |
atgttccttcat |
187 |
Q |
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|||||||||||| |
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| T |
47904011 |
atgttccttcat |
47904022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 42997012 - 42996970
Alignment:
| Q |
100 |
tgagcaacagcccatgccaatgacaacactccagatcctatta |
142 |
Q |
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| T |
42997012 |
tgagcaatagccaatgtcaatgacaacactccagatcctatta |
42996970 |
T |
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