View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_29 (Length: 309)
Name: NF11218_low_29
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 43816920 - 43817201
Alignment:
| Q |
12 |
caaaggggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaatgagt |
111 |
Q |
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| T |
43816920 |
caaaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaatgagt |
43817019 |
T |
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| Q |
112 |
ttcatcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcaccacccttcatggata |
211 |
Q |
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| T |
43817020 |
ttcatcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcaccacccttcatggata |
43817119 |
T |
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| Q |
212 |
gaagtttttccttcttctcagctaaagtgtaacgaaatgatcctgatttcgctaactttggagccataattgattgctttgt |
293 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43817120 |
gaagtttttccttcttctcagctaaagtgtaaagaaatgatcctgatttcgctaactttggtgccataattgattgctttgt |
43817201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 43824856 - 43825125
Alignment:
| Q |
12 |
caaaggggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgctttttcagcaatgagt |
111 |
Q |
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|||| ||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43824856 |
caaaagggagataagggccaaagcaagacccattttagcagcgaaaatgatcttccttggatcagaacgacccatttcccatgctttttcagcaacgagt |
43824955 |
T |
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| Q |
112 |
ttcatcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcaccacccttcatggata |
211 |
Q |
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| T |
43824956 |
ttcatcatctctttgaatttgaccatattagattcctcttgttcttgtagcaaaccatttcctat------------atgatcaccacccttcattgaga |
43825043 |
T |
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| Q |
212 |
gaagtttttccttcttctcagctaaagtgtaacgaaatgatcctgatttcgctaactttggagccataattgattgctttgt |
293 |
Q |
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||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
43825044 |
gaagtctttcctttttctcagctaaagtataacgaaatgatcctgatttcgctaactttggtgccatgattgattgctttgt |
43825125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 43831824 - 43831900
Alignment:
| Q |
12 |
caaaggggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccattt |
88 |
Q |
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|||| ||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| |||||||||| |
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| T |
43831824 |
caaaagggagataatagtcaaagcaagacccatttttgcggcaaatataatcttccttggatcagaccgacccattt |
43831900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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