View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_30 (Length: 308)
Name: NF11218_low_30
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 17258436 - 17258711
Alignment:
| Q |
16 |
tgtctctctttgtttgccagccatatggaatctgtgacaccttgttttggttttccgaatggtcgcactgtctttctaagagaattattgttacctaaga |
115 |
Q |
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| T |
17258436 |
tgtctctctttgtttgccagccatatggaatctgtgataccttgtcttggttttccgaatggtcgtactgtatttctaagagaattattgttacctaaga |
17258535 |
T |
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| Q |
116 |
tcattttctttccagggtagaggtcatgttcgnnnnnnngtgtcgagtattggttcaattcttcggttttgataggtagattattagttttgccatctgc |
215 |
Q |
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| T |
17258536 |
tcattttctttccagggtagaggtcatgttcgaaaaaaagtgtcgagtattggttcaattcttcggttttgataggtagattatttgttttgccatctgc |
17258635 |
T |
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| Q |
216 |
caaatcnnnnnnnnnnnnnncaattaatttctaaatcatgacacagtcttattattaggagggaccaaaatatataattcat |
297 |
Q |
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| T |
17258636 |
caaatc------caaaaaaacaattaattcctaaatcatgacacagtcttattattaggaggcagcaaaatatacaattcat |
17258711 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 17986937 - 17986973
Alignment:
| Q |
109 |
cctaagatcattttctttccagggtagaggtcatgtt |
145 |
Q |
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| T |
17986937 |
cctaagctcattttctttccagggtagaggtcatgtt |
17986973 |
T |
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