View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_31 (Length: 305)
Name: NF11218_low_31
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_31 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 25816829 - 25816551
Alignment:
| Q |
11 |
caaaggtaaagtttccattccctacattaatatgtcatggagacacatcatcttatggtactaaacaaaacataagggttatataacacactaaaacaaa |
110 |
Q |
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| T |
25816829 |
caaaggtaaagtttccattccctacattaatatgtcaaggagacacatcatcttgtggtactaaacaaaacataagggttctataacacgctaaaacaaa |
25816730 |
T |
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| Q |
111 |
aagacaagacaaaagatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgcag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25816729 |
aagacaagacaaaagatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgtag |
25816630 |
T |
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| Q |
211 |
catacaatgtattctgtaaaccacttcctttaccatgttccatatataaattgagccaattctccaccaacatttccct |
289 |
Q |
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| T |
25816629 |
catgcaatgtattctgtaaaccacttcctttaccatgttccatatataaattgagccaattctccaccaacatttccct |
25816551 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 25802564 - 25802508
Alignment:
| Q |
233 |
acttcctttaccatgttccatatataaattgagccaattctccaccaacatttccct |
289 |
Q |
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| T |
25802564 |
acttcctttaccatgtcccatatataagttgtaccaattttccaccagcatttccct |
25802508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 108672 - 108728
Alignment:
| Q |
233 |
acttcctttaccatgttccatatataaattgagccaattctccaccaacatttccct |
289 |
Q |
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|||||||||||||||| |||||||||| ||| |||||| ||||||| ||||||||| |
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| T |
108672 |
acttcctttaccatgtcccatatataagttgtaccaattttccaccagcatttccct |
108728 |
T |
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