View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_33 (Length: 296)
Name: NF11218_low_33
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 17860135 - 17860419
Alignment:
| Q |
1 |
gatcacattcacgctaacataactagactcggatggagttgcagatggatgaccagaattatgatgttggtcataggcatccttgtaccaattgaacagt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
17860135 |
gatcacattctcgctaacataactagactcggatggacttgcagatggatgaccagaattatgttgctggtcataggcatccttgtaccaattgaacagt |
17860234 |
T |
|
| Q |
101 |
ttgaacagctgagtatggatcacaacaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17860235 |
ttgaacagctgagtatggatcacagcaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgt |
17860334 |
T |
|
| Q |
201 |
atcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
285 |
Q |
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| T |
17860335 |
atcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
17860419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 34915677 - 34915393
Alignment:
| Q |
1 |
gatcacattcacgctaacataactagactcggatggagttgcagatggatgaccagaattatgatgttggtcataggcatccttgtaccaattgaacagt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
34915677 |
gatcacattctcgctaacataactagactcggatggacttgcagatggatgaccagaattatgttgctggtcataggcatccttgtaccaattgaacagt |
34915578 |
T |
|
| Q |
101 |
ttgaacagctgagtatggatcacaacaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgt |
200 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915577 |
ttgaacagctgagtatggatcatagcaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgt |
34915478 |
T |
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| Q |
201 |
atcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915477 |
atcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
34915393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 4968666 - 4968950
Alignment:
| Q |
1 |
gatcacattcacgctaacataactagactcggatggagttgcagatggatgaccagaattatgatgttggtcataggcatccttgtaccaattgaacagt |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
4968666 |
gatcacattctcgctaacataactagactcggatggacttgcagacggatgaccagaattatgttgctggtcataggcatccttgtaccaattgaacagt |
4968765 |
T |
|
| Q |
101 |
ttgaacagctgagtatggatcacaacaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacatagctaaacttgt |
200 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4968766 |
ttgaatagctgagtatggatcacagcaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcaccactccacataactaaacttgt |
4968865 |
T |
|
| Q |
201 |
atcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4968866 |
atcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttctgcttcat |
4968950 |
T |
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