View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_40 (Length: 253)
Name: NF11218_low_40
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37484764 - 37484527
Alignment:
| Q |
1 |
ttagtggagtgtttggttaagatattgaattcaaggagactaagtttgaggtagtttgaataataagggaaaatgttgagttgattgagtggattattgt |
100 |
Q |
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| T |
37484764 |
ttagtggagtgtttggttaagatattgaattcaaggagactaagtttgaggtagtttgaataataagggaaaatgttgagttgattgagtggattattgt |
37484665 |
T |
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| Q |
101 |
atgaagctatgatagttgagtagtgactttctaaatggccttcagcttcaccacatagccttatgagtttggatctaatttcttgaacttttgtgctaag |
200 |
Q |
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| T |
37484664 |
atgaagctatgatagttgagtagtgactttctaaatggccttcagcttcaccacatagccttatgagtttggatctaatttcttgaacttttgtgctaag |
37484565 |
T |
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| Q |
201 |
tttggtaacatcaatgggactaggtggcatgcatgtga |
238 |
Q |
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| T |
37484564 |
tttggtaacatcaatgggactaggtggcatgcatgtga |
37484527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 46097970 - 46097837
Alignment:
| Q |
31 |
tcaaggagactaagtttgaggtagtttgaataataagggaaaatgttgagttgattgagtggattattgtatgaagctatgatagttgagtagtgacttt |
130 |
Q |
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| T |
46097970 |
tcaaggtgaccaagtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagtgtctct |
46097871 |
T |
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| Q |
131 |
ctaaatggccttcagcttcaccacatagccttat |
164 |
Q |
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| T |
46097870 |
ccaaatacccttcagcttcaccacatagccttat |
46097837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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