View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_43 (Length: 246)
Name: NF11218_low_43
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 40572726 - 40572513
Alignment:
| Q |
16 |
atgaacccaaatcccttacccttatatcgtttctctttctttcaccatcccatttggtgacgccatgtaatgacaaatggctactgtgctattatttgtt |
115 |
Q |
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| T |
40572726 |
atgaacccaaatcccttacccttatatcgtttctctttctttcaccatcccatttggtgacgccatgtaatgacaaatggctactgtgctattatttgtt |
40572627 |
T |
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| Q |
116 |
gacaacgacaacaatctggctttggagatgagtagtaccgctttgaagtagctctgcctcttggagtctgatgagagcaagttttctggttatatttcta |
215 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40572626 |
gacaactacaacaatctcgctttggagatgagtagtaccgctttgaagtagctctgcctcttggagtctgatgagagcaagttttctagttatatttcta |
40572527 |
T |
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| Q |
216 |
tagataggtgaaat |
229 |
Q |
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|||||||||||||| |
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| T |
40572526 |
tagataggtgaaat |
40572513 |
T |
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