View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_48 (Length: 226)
Name: NF11218_low_48
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 29406006 - 29405812
Alignment:
| Q |
14 |
caaagggctgaagtcctgcattgacaaatgcattgaaactaagtttttgacagaaattagtaaaatcagaattaagcaattatatgaaaattttaccttt |
113 |
Q |
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| T |
29406006 |
caaagggctgaagtcctgcattgacaaatgcattgaaactaagtttttgacagaaattagtaaaatcagaattaagcaattatatgaaaattttaccttt |
29405907 |
T |
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| Q |
114 |
gtcaagaagttcatttataagattgttgtaataattgattccttccttgttcacacctctactagcctttccttctgaaataagccaagcaatct |
208 |
Q |
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| T |
29405906 |
gtcaagaagttcatttataagattgttgtaataattgattccttccttgttcacacctctactagcctttccttctgaaataagccaagcaatct |
29405812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 29460402 - 29460485
Alignment:
| Q |
108 |
acctttgtcaagaagttcatttataagattgttgtaataattgattccttccttgttcacacctctactagcctttccttctga |
191 |
Q |
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| T |
29460402 |
acctttggcaagcagctcattgatgaggttgttgtaataattgattccttccttgtttatacctccaccaagctttccttctga |
29460485 |
T |
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