View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_49 (Length: 225)
Name: NF11218_low_49
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 13012985 - 13013176
Alignment:
| Q |
15 |
cacagatggaataaaaataggcaaatcaaacgggataactattaaaagtgcgaacatcggcaccggtgatgattgcattgcaatgatatctggtactagg |
114 |
Q |
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| T |
13012985 |
cacagatggaataaaaataggcaaatcaaacgggataactattaaaagtgcgagcatcggcaccggtgatgattgtattgcaatggtctctggtactagg |
13013084 |
T |
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| Q |
115 |
aatgtttggatctctgacgtttcttgtggtcctggacatggagttagtattggaagtcttggaaagaatgatggagaagaagatgttgacaa |
206 |
Q |
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| T |
13013085 |
aatgtttggatctctgacgttttttgtggtcctggacatggagttagtattggaagtcttggaaagaatgatggagaagaagatgttgacaa |
13013176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 11532313 - 11532501
Alignment:
| Q |
15 |
cacagatggaataaaaataggcaaatcaaacgggataactattaaaagtgcgaacatcggcaccggtgatgattgcattgcaatgatatctggtactagg |
114 |
Q |
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| T |
11532313 |
cacagatggtattaaaatagggatgtcaaagggaataaatatttcaagtgtgaacattggaaccggcgatgattgcattgctatgctctcaggtactagg |
11532412 |
T |
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| Q |
115 |
aatgtttggatctctgacgtttcttgtggtcctggacatggagttagtattggaagtcttggaaagaatgatggagaagaagatgttga |
203 |
Q |
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| T |
11532413 |
aatgttcgaatttcagatgttttttgtggtcctggtcatggaattagtgtcggaagtcttggtgggaatgaaggtgaagaagatattga |
11532501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 49616731 - 49616806
Alignment:
| Q |
50 |
taactattaaaagtgcgaacatcggcaccggtgatgattgcattgcaatgatatctggtactaggaatgtttggat |
125 |
Q |
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| T |
49616731 |
taactatcacaagtgtgaacattgcaactggtgatgattgcattgctatgatctctggtactgggaatgtatggat |
49616806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 49617495 - 49617380
Alignment:
| Q |
79 |
ggtgatgattgcattgcaatgatatctggtactaggaatgtttggatctctgacgtttcttgtggtcctggacatggagttagtattggaagtcttggaa |
178 |
Q |
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| T |
49617495 |
ggtgatgactgcattgctatgatctctagtactaagaatgtttggatttcatatgttctttgtggtcttggtcatggaatcggtgttgaaagccttggta |
49617396 |
T |
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| Q |
179 |
agaatgatggagaaga |
194 |
Q |
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| T |
49617395 |
agaatgatggggaaga |
49617380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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