View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_6 (Length: 575)
Name: NF11218_low_6
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 34655517 - 34656065
Alignment:
| Q |
1 |
ctacacaacatgagtctggcttgctagaaaaaacagaatnnnnnnnngaaagaaggaaggagccgtatataggcggcagatccgaataaacccaaaacat |
100 |
Q |
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| T |
34655517 |
ctacacaacataagtctggcttgcaagaaaaaacagaataa-------aaaaaaggaaggagccgtatatagacggcacatccgaataaacccaaaacaa |
34655609 |
T |
|
| Q |
101 |
actttctaactacaccctcacctgtcctactatatgtcctaaaaactcccagtgggactaaaaactgcccagcccaaaatatattacaactgcacctaaa |
200 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34655610 |
actttctaaccacaccctcatatgtcctactatatgtcctaaaaactcccagtgggactaaaaactgcccagcccaaaatacattacaactgcacctaaa |
34655709 |
T |
|
| Q |
201 |
gggcttaatactccaccc--aaaaaataccactatctacaccctaaccagctacaacaaccaataataagcacaaaaataatacattgagaga---aagn |
295 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
34655710 |
gggcttaatactccacccaaaaaaaataccactatctacaccctaaccagctacaacaaccaataagaagcacaaaaataatacattgagagaaagaaga |
34655809 |
T |
|
| Q |
296 |
nnnnnnnnncacagtgtctaggccgcaacagctccgaaacccccatccaccatgctcaccgaaatatgtccagctttacaccatctccatagacaatctc |
395 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
34655810 |
aaaaaaaaacacagtgtctaggccgcaacagctccgaaacccccatccaccatgctcacccaaatatgtccagctctacaccatctccatagacaatctc |
34655909 |
T |
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| Q |
396 |
caggatctcaacaccacacataaaacaagcaaggcgtatacttcaatctagtgaatccccacctccaagataacaccgtaatttcatccaccatctcgcc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34655910 |
caggatctcaacaccacacataaaacaagcaaggcgtacacttcaatctagcgaacccccacctccaagataacaccgtaatttcatccaccatctcgcc |
34656009 |
T |
|
| Q |
496 |
tacctctttaa-tttgattgttgaaaaatttatcatttcttgctttccaaattgccgcatgc |
556 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34656010 |
tacctctttaattttgattgttgaaaaat------tttcttgctttccaaattgccgcatgc |
34656065 |
T |
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