View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_7 (Length: 565)
Name: NF11218_low_7
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 236 - 553
Target Start/End: Complemental strand, 51414571 - 51414248
Alignment:
| Q |
236 |
gtcggacaacatctacatcttagtcga------gatcatcagagcatctttaacccttaagaactgaatggttaacaattctattcattaggccaccaat |
329 |
Q |
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| T |
51414571 |
gtcggacaacatctacatcttagtcgaactccagatcatcagagcatctttttcccttaagaactgaatggttaacaattctattcattagaccaccaat |
51414472 |
T |
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| Q |
330 |
cccattgagatccacttcttgaaccttcctgcccactcatcggtccttatttacacatagtcattttcattctcttatgaatttgtttcaattatgtgtt |
429 |
Q |
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| T |
51414471 |
cccattgagatccacttcttgaaccttcctgctcactcatcggtccttatttacacatagtcattttcattctcttatgaatttgtttcaattatgtgtt |
51414372 |
T |
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| Q |
430 |
gatttgcctcgaaacatgtcagaagaaacagtttattaaatatatcatagtgtcatgcattggtgatgactattcacgttcctcgtcaacccaattacac |
529 |
Q |
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| T |
51414371 |
gatttgcttcgaaacatgtcagaagaaacagtttattaaatatatcatagtgtcatgcattggtgatgactatttacgtccctcgtcaacctaattacac |
51414272 |
T |
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| Q |
530 |
aactaaaaataaaaatgaccttct |
553 |
Q |
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| T |
51414271 |
aactaaaaataaaaatgaccttct |
51414248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 51414790 - 51414623
Alignment:
| Q |
17 |
acaaactaatgttttaaatataagcatcatattaatatctttatatcccttnnnnnnnttaacatcactataatcttaattagctaagaagcaagatagt |
116 |
Q |
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| T |
51414790 |
acaaactaattttttaaatataagcatcatattaacatctttatatcccttaaaaaaattaacatcattataatcttaattagctaagaagcaagatagt |
51414691 |
T |
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| Q |
117 |
gttgattaacattgaaaatgatcaactaagtgataagcatcatgtgattgatgatcttcatcaaaaga |
184 |
Q |
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| T |
51414690 |
gttgattaacattggaaatgatcaactaagtgataagcatcatatgattgatgatctccatcaaaaga |
51414623 |
T |
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