View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11219_high_10 (Length: 286)

Name: NF11219_high_10
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11219_high_10
NF11219_high_10
[»] chr8 (3 HSPs)
chr8 (4-262)||(40572835-40573093)
chr8 (160-240)||(17858180-17858260)
chr8 (160-240)||(41691185-41691265)
[»] chr2 (2 HSPs)
chr2 (154-246)||(36212633-36212724)
chr2 (194-246)||(6695570-6695622)
[»] chr4 (1 HSPs)
chr4 (160-240)||(7447396-7447476)
[»] chr6 (1 HSPs)
chr6 (151-242)||(2540587-2540678)
[»] scaffold0062 (3 HSPs)
scaffold0062 (174-242)||(16921-16989)
scaffold0062 (174-242)||(27089-27157)
scaffold0062 (174-242)||(37255-37323)
[»] chr1 (2 HSPs)
chr1 (113-173)||(3654287-3654347)
chr1 (160-240)||(48434785-48434865)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 40572835 - 40573093
Alignment:
Q  4 tttgatgcttcaaaattatgtcatgttctctctcatagtctattttatttccttcttctattatttcttcggtctaatatatttttaatttctcaatgtg 103  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  40572835 tttgatgcttcaaaaatatgtcatgtcctctctcatagtctattttatttccttcttctattatttcttcagtctaatatatttttaacttctcaatgtg 40572934  T
Q  104 gcgaaaaactgaggattttgaaaaaataacttggaacaaacaggatattgtttgcttgaataaggagtttggaggtttggggataaggataattaaagaa 203  Q
    |||||||| |||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  40572935 gcgaaaaagtgaggatttttaaaaaataacttggatcaaacgggacattgtttgcttgaataagtagtttggaggttttgggataaggataattaaagaa 40573034  T
Q  204 tttaatgtggctcctctaggtaaatggtgttggaggttgagggggaaaagataatggtt 262  Q
    ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  40573035 tttaatgtggctcttctaggtaaatgatgttggaggttgagggagaaaagataatggtt 40573093  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 17858180 - 17858260
Alignment:
Q  160 tgaataaggagtttggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggt 240  Q
    ||||||||||| |||| ||||||||| | |||| ||| |||||||||||  | |||| ||| | |||||||||||||||||    
T  17858180 tgaataaggaggttggtggtttgggggttaggagaataaaagaatttaacatagctcttcttgctaaatggtgttggaggt 17858260  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 41691185 - 41691265
Alignment:
Q  160 tgaataaggagtttggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggt 240  Q
    ||||||||| | |||| ||||||||| ||||||   |  ||||||||||| | |||| ||| |||||||||||||||||||    
T  41691185 tgaataagggggttggtggtttgggggtaaggagtctacaagaatttaatattgctcttctgggtaaatggtgttggaggt 41691265  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 36212633 - 36212724
Alignment:
Q  154 tttgcttgaataaggagtttggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggttgaggg 246  Q
    |||| ||||| |||||| |||| ||||||| | | | || ||||||||||||||||||||||| | | ||| |||||||||||||||||||||    
T  36212633 tttgtttgaaaaaggaggttggtggtttggaggttaagagaattaaagaatttaatgtggctcttttcggt-aatggtgttggaggttgaggg 36212724  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 6695570 - 6695622
Alignment:
Q  194 aattaaagaatttaatgtggctcctctaggtaaatggtgttggaggttgaggg 246  Q
    ||||| ||||||||||||||||| | | || | ||||||||||||||||||||    
T  6695570 aattagagaatttaatgtggctcatttgggaatatggtgttggaggttgaggg 6695622  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 7447476 - 7447396
Alignment:
Q  160 tgaataaggagtttggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggt 240  Q
    ||||||||||| |||| ||||||||| | |||| ||| |||||||||||  | |||| ||| | |||||||||||||||||    
T  7447476 tgaataaggaggttggtggtttgggggttaggagaataaaagaatttaacattgctcttcttgctaaatggtgttggaggt 7447396  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 2540678 - 2540587
Alignment:
Q  151 ttgtttgcttgaataaggagtttggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggttg 242  Q
    ||||||| || | ||||||| |||| |||||||||||||||| ||||| ||||||||||   ||||   |||| || |||||||||||||||    
T  2540678 ttgtttgtttaagtaaggaggttggtggtttggggataaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttg 2540587  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 16921 - 16989
Alignment:
Q  174 ggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggttg 242  Q
    |||||||||||  | |||| ||| | |||||||||| |||| | |||||||||||||||||||| ||||    
T  16921 ggaggtttgggagtgaggagaatgagagaatttaatttggcccttctaggtaaatggtgttggaagttg 16989  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 27089 - 27157
Alignment:
Q  174 ggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggttg 242  Q
    |||||||||||  | |||| ||| | |||||||||| |||| | |||||||||||||||||||| ||||    
T  27089 ggaggtttgggagtgaggagaatgagagaatttaatttggcccttctaggtaaatggtgttggaagttg 27157  T

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Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 37255 - 37323
Alignment:
Q  174 ggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggttg 242  Q
    |||||||||||  | |||| ||| | |||||||||| |||| | |||||||||||||||||||| ||||    
T  37255 ggaggtttgggagtgaggagaatgagagaatttaatttggcccttctaggtaaatggtgttggaagttg 37323  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 3654347 - 3654287
Alignment:
Q  113 tgaggattttgaaaaaataacttggaacaaacaggatattgtttgcttgaataaggagttt 173  Q
    |||||||||  ||||||||||||||| ||||  ||| | | ||||||||||||||||||||    
T  3654347 tgaggatttcaaaaaaataacttggatcaaatgggacactatttgcttgaataaggagttt 3654287  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 48434865 - 48434785
Alignment:
Q  160 tgaataaggagtttggaggtttggggataaggataattaaagaatttaatgtggctcctctaggtaaatggtgttggaggt 240  Q
    ||||||||||| |||| ||||||||| |  ||| ||| |||||||||||  | |||| ||| | |||||||||||||||||    
T  48434865 tgaataaggaggttggtggtttgggggttcggagaataaaagaatttaacttagctcttcttgctaaatggtgttggaggt 48434785  T

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