View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11219_high_16 (Length: 228)
Name: NF11219_high_16
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11219_high_16 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0071 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 11439601 - 11439373
Alignment:
| Q |
1 |
tcaatatcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttacc |
100 |
Q |
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| T |
11439601 |
tcaatatcaaggattttggattggcacgagaattcttcaaggtgttttatcttgtcaaaaacactttcaagcccttaatacagatatcctcttagttacc |
11439502 |
T |
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| Q |
101 |
actcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgca-aaaatatcaaaatattcataatatcaatcatcctttgctca |
199 |
Q |
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| T |
11439501 |
actcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatttcaatcatcctttactca |
11439402 |
T |
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| Q |
200 |
ctacaaaccctcatgttcttgttcccttc |
228 |
Q |
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| T |
11439401 |
cttcaaaccctcatgttcttgtccccttc |
11439373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 11318025 - 11317891
Alignment:
| Q |
1 |
tcaatatcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttacc |
100 |
Q |
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||||||||||||||||||| || |||||| |||||||||||| |||||||||||| ||| | |||||||||||| |||| ||||||||| |||||||| |
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| T |
11318025 |
tcaatatcaaggattttggcttaccacaaggattctccaaggtactttatcttgtcataagcaatttcaagcccttgatactgatatcctcatagttacc |
11317926 |
T |
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| Q |
101 |
actcccaaatcaggtaccacttggctcaaagcatt |
135 |
Q |
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| T |
11317925 |
actccaaaagcaggcaccacttggcttaaagcatt |
11317891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 15460773 - 15460887
Alignment:
| Q |
111 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaa-atatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
209 |
Q |
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| T |
15460773 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
15460872 |
T |
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| Q |
210 |
tcatgttcttgttcc |
224 |
Q |
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| T |
15460873 |
tcatgttcttgttcc |
15460887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 15460438 - 15460487
Alignment:
| Q |
38 |
caaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatat |
87 |
Q |
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| T |
15460438 |
caaggagttttatcttttcaaaagcactttcaagcccatgatacagatat |
15460487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 27504351 - 27504570
Alignment:
| Q |
3 |
aatatcaaggattttggattgg-cacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttacca |
101 |
Q |
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| T |
27504351 |
aatatcaaggattttggtttgctcccaaga-ttctccaaggtgctttatcttttcaaaagcactttcaagccattgatacagatattatcttagttacaa |
27504449 |
T |
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| Q |
102 |
ctcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaa-aaatatcaaaatattcataatatcaatcatcctttgctcac |
200 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||| |||||||| || ||||||| |||||||||||| ||||||||||| ||||| |
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| T |
27504450 |
atcccaaatcaggtaccacttggctcaaagcattgacttttgctttgataaaccgtaacaaatatccaaatattcataa---aaatcatcctttactcac |
27504546 |
T |
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| Q |
201 |
tacaaaccctcatgttcttgttcc |
224 |
Q |
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| T |
27504547 |
ttccaaccctcatgttcttgttcc |
27504570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27499571 - 27499346
Alignment:
| Q |
1 |
tcaatatcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttacc |
100 |
Q |
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||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||| ||||||||||||| || |||||||| ||||||||||| |
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| T |
27499571 |
tcaatatcaaggattttggattgccacaaaaaaatttcaaggtgttttatcttgtcagaagcactttcaagccctagattcagatatcatcttagttacc |
27499472 |
T |
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| Q |
101 |
actcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaa-aaatatcaaaatattcataatatcaatcatcctttgctca |
199 |
Q |
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| T |
27499471 |
gctcccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataa---caaccatcctttgctca |
27499375 |
T |
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| Q |
200 |
ctacaaaccctcatgttcttgttcccttc |
228 |
Q |
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| | || || ||| ||||||||||||| |
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| T |
27499374 |
tttccaatccccattctcttgttcccttc |
27499346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 1419 - 1305
Alignment:
| Q |
111 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaa-atatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
209 |
Q |
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| T |
1419 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
1320 |
T |
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| Q |
210 |
tcatgttcttgttcc |
224 |
Q |
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| T |
1319 |
tcatgttcttgttcc |
1305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 1754 - 1705
Alignment:
| Q |
38 |
caaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatat |
87 |
Q |
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||||| |||||||||| ||||||| |||||||||||| | |||||||||| |
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| T |
1754 |
caaggagttttatcttttcaaaagcactttcaagcccatgatacagatat |
1705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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