View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11219_high_7 (Length: 400)
Name: NF11219_high_7
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11219_high_7 |
 | |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 20)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 117 - 380
Target Start/End: Original strand, 9357612 - 9357875
Alignment:
| Q |
117 |
ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9357612 |
ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtta |
9357711 |
T |
|
| Q |
217 |
gggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgattt |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9357712 |
gggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgattt |
9357811 |
T |
|
| Q |
317 |
cgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtggtgttacg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
9357812 |
cgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacg |
9357875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 35 - 361
Target Start/End: Complemental strand, 9283973 - 9283644
Alignment:
| Q |
35 |
taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag |
134 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||||||||||| ||||| |||||| |||| ||||||||||| |||||| |
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|
| T |
9283973 |
taggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggag |
9283874 |
T |
|
| Q |
135 |
tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg---tcaatgttgaaagatcggagaatgttagggataggaagaggg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
9283873 |
tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatgttagggataggaagaggg |
9283774 |
T |
|
| Q |
232 |
aggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatgg |
331 |
Q |
| |
|
|| ||||| ||||| |||||||| | |||||| ||||||||||| |||||| | ||| |||| |||||| | ||||| ||| ||||||| |||||| |
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|
| T |
9283773 |
agaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagcaattgggccattgtagatgg |
9283674 |
T |
|
| Q |
332 |
cgaggaggccgttacatgaaccgataagag |
361 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
9283673 |
cgaggaggccgttacatgaaccaataagag |
9283644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 35 - 366
Target Start/End: Original strand, 10353468 - 10353802
Alignment:
| Q |
35 |
taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag |
134 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| |||||||||||||||| || |||||||||||||| |||| || || ||||||||||||||| |
|
|
| T |
10353468 |
taggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggag |
10353567 |
T |
|
| Q |
135 |
tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgcc---gtcaatgttgaaagatcggagaatgttagggataggaagaggg |
231 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||| |||||||||| | ||| || | |||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10353568 |
tttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgttagggataggaagaggg |
10353667 |
T |
|
| Q |
232 |
aggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatgg |
331 |
Q |
| |
|
|| ||||| ||||| |||| |||| | |||| |||||||| |||| ||||||||||| ||||||||||||| ||||||| ||| |||| | ||| |||| |
|
|
| T |
10353668 |
agaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctattacgccgtgggacatgg |
10353767 |
T |
|
| Q |
332 |
cgaggaggccgttacatgaaccgataagagaaatg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
10353768 |
cgaggaggccgttacatgaaccgataagagtaatg |
10353802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 9316358 - 9316704
Alignment:
| Q |
18 |
aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac |
117 |
Q |
| |
|
|||||| |||||||| || |||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||| | | | | | | | |
|
|
| T |
9316358 |
aagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaagagcaatgaccatcggccatc |
9316457 |
T |
|
| Q |
118 |
caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatg---ttgaaagatcggagaatgt |
214 |
Q |
| |
|
||||| |||||||||||||||||||| || ||| | |||||||||||||||||||||||||||| ||||||| | || ||| |||| ||||||| |
|
|
| T |
9316458 |
caagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagattcaagaatgt |
9316557 |
T |
|
| Q |
215 |
tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat |
314 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| ||||||||| | |||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
9316558 |
tagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgat |
9316657 |
T |
|
| Q |
315 |
ttcgccattggagatggcgaggaggccgttacatgaaccgataagag |
361 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
9316658 |
ttgaccattggaaatggcgagaaggccgttacatgaaccgagaagag |
9316704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 361
Target Start/End: Original strand, 9321313 - 9321652
Alignment:
| Q |
25 |
tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga |
124 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||||||| | |||| ||||||||||||||||||| |||||||| ||| | | ||||| |||||||||||| |
|
|
| T |
9321313 |
tacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagaga |
9321412 |
T |
|
| Q |
125 |
ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg---tcaatgttgaaagatcggagaatgttagggat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | || | | |||||| ||| | ||||| |||||| |
|
|
| T |
9321413 |
ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataagcagcagcgattgatgttgtcggattccataatgtcagggat |
9321512 |
T |
|
| Q |
222 |
aggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgcca |
321 |
Q |
| |
|
||||||||| |||||||| || || |||| |||| || ||||||||||||||| ||||||||||| | ||||||||| ||||||| | || ||| |
|
|
| T |
9321513 |
aggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggccg |
9321612 |
T |
|
| Q |
322 |
ttggagatggcgaggaggccgttacatgaaccgataagag |
361 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9321613 |
tgggagatggcgaggaggccgttacaggaaccgataagag |
9321652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 9292261 - 9292604
Alignment:
| Q |
18 |
aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac |
117 |
Q |
| |
|
|||||| |||||||| |||||||| | |||||| ||||| ||||| |||| |||||||| || |||| ||| ||||| || | ||| | ||| | |
|
|
| T |
9292261 |
aagagcgtacggcatactaggaatgattttccacgagttagttttggagctgaagagtctcacctgtg---gatcaaaagagtaatgtaggtcggctatc |
9292357 |
T |
|
| Q |
118 |
caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg---tcaatgttgaaagatcggagaatgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |||||||| ||| |||||||| |
|
|
| T |
9292358 |
caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacaccggcgcgatcaatgttttcagactcgagaatgt |
9292457 |
T |
|
| Q |
215 |
tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat |
314 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||| |||||||| ||||||||||| ||| || ||||||||| | ||||| ||||||| |||| ||| |
|
|
| T |
9292458 |
tagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagat |
9292557 |
T |
|
| Q |
315 |
ttcgccattggagatggcgaggaggccgttacatgaaccgataagag |
361 |
Q |
| |
|
|| || |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
9292558 |
ttggctattggaaatggcgaggaggccgttacatgaaccaataagag |
9292604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 9060935 - 9060764
Alignment:
| Q |
18 |
aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac |
117 |
Q |
| |
|
|||||| |||||||| || |||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||||| | ||| | |||| |
|
|
| T |
9060935 |
aagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataac |
9060836 |
T |
|
| Q |
118 |
caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg |
189 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9060835 |
caagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccg |
9060764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 117 - 360
Target Start/End: Original strand, 9329028 - 9329274
Alignment:
| Q |
117 |
ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtca---atgttgaaagatcggagaatg |
213 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| | | | |||||| |||| |||||| |
|
|
| T |
9329028 |
ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagattcaagaatg |
9329127 |
T |
|
| Q |
214 |
ttagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcga |
313 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||||||||| | |||||||||||||||||| ||||||||||| | ||||||| | ||| ||||||| |
|
|
| T |
9329128 |
ttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcga |
9329227 |
T |
|
| Q |
314 |
tttcgccattggagatggcgaggaggccgttacatgaaccgataaga |
360 |
Q |
| |
|
||| ||||| |||||| || | ||||||||| ||||||||||||||| |
|
|
| T |
9329228 |
tttggccataggagatagcaatgaggccgttgcatgaaccgataaga |
9329274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 8573272 - 8573142
Alignment:
| Q |
45 |
tttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggagtttgtaatcg |
144 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| | | ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
8573272 |
tttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgactaaccaagagattcggaggagtttgtaatcg |
8573173 |
T |
|
| Q |
145 |
ccggttaaaggatcaaaaccgaagccgtgaa |
175 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
8573172 |
gcggttaatagatcaaaaccgaagccgtgaa |
8573142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 215 - 362
Target Start/End: Original strand, 10348312 - 10348459
Alignment:
| Q |
215 |
tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat |
314 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||| |||||||||| | |||||||||| ||||| |||| |
|
|
| T |
10348312 |
taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat |
10348411 |
T |
|
| Q |
315 |
ttcgccattggagatggcgaggaggccgttacatgaaccgataagaga |
362 |
Q |
| |
|
| | || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10348412 |
tacccctgtggagatggcgaggaggccgttacatgaaccgataagaga |
10348459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 9274845 - 9275197
Alignment:
| Q |
18 |
aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac |
117 |
Q |
| |
|
|||||| |||||||| || ||||||| |||||| ||||||||||||||||| |||||||| |||||||| | | |||| || | || | ||||| |
|
|
| T |
9274845 |
aagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtgattca---aaagagtaatgtatatcagctaac |
9274941 |
T |
|
| Q |
118 |
caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgcc------------gtcaatgttgaaagatc |
205 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||| ||||||||||||||| || |||||||| | ||| ||| |||||||||| ||| |
|
|
| T |
9274942 |
catgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaacaaacacagcgcacaaagcaacactgtcaatgttgtctgatt |
9275041 |
T |
|
| Q |
206 |
ggagaatgttagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcct |
305 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||| ||||| || || ||| ||||||||| |
|
|
| T |
9275042 |
tgagaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcct |
9275141 |
T |
|
| Q |
306 |
gaaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagag |
361 |
Q |
| |
|
||| ||| ||| |||||||||||| || | |||||||||||||||||| ||||||| |
|
|
| T |
9275142 |
gaaggcggtttggccattggagatagcaatgaggccgttacatgaacctataagag |
9275197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 220 - 379
Target Start/End: Complemental strand, 8573100 - 8572941
Alignment:
| Q |
220 |
ataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgc |
319 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||| ||||| ||||||| | ||||| || | ||||||||| | |
|
|
| T |
8573100 |
ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaac |
8573001 |
T |
|
| Q |
320 |
cattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtggtgttac |
379 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
8573000 |
cattagaaatggcgaggaggccgttacatgaaccgataagagtaattttggtgctgttac |
8572941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 353
Target Start/End: Original strand, 10336198 - 10336503
Alignment:
| Q |
45 |
tttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaag---ggttttttagagagactaaccaagagattctgaggagtttgtaa |
141 |
Q |
| |
|
|||||| |||||||||||| |||| |||||| | | |||||||| || ||||| ||| || |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10336198 |
tttccaagagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaa |
10336297 |
T |
|
| Q |
142 |
tcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgttaggg-ataggaagagggaggaaagga |
240 |
Q |
| |
|
||| ||| ||| | |||||||||||| ||||||||||||| | || |||||| |||| ||||| | |||| |||||||||||||| |||| |
|
|
| T |
10336298 |
tcggcggataatgaatcaaaaccgaatccgtgaacgcataaagcg------atgttgtcagat-tgagaacgagagggaataggaagagggagataaggg |
10336390 |
T |
|
| Q |
241 |
ataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatggcgaggaggc |
340 |
Q |
| |
|
||||| ||||||||| |||| |||| || |||| || |||||| ||||||| || ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336391 |
ataatccgatgtttacggatggtaggattacagaatgcgatttcattggcggagtaagggttagtgaaagcgatttcgccattggagatggcgaggaggc |
10336490 |
T |
|
| Q |
341 |
cgttacatgaacc |
353 |
Q |
| |
|
| || |||||||| |
|
|
| T |
10336491 |
cattgcatgaacc |
10336503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 7115434 - 7115107
Alignment:
| Q |
23 |
catacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaaga |
122 |
Q |
| |
|
|||||||||| |||||| | |||||| |||||||||||||| || |||||||||| ||||||| |||||||| |||| | || | ||||||||| |
|
|
| T |
7115434 |
catacggcattacaggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaaga |
7115335 |
T |
|
| Q |
123 |
gattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacacc---gccgtcaatgttgaaagatcggagaatgttaggg |
219 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||| ||| ||| | ||| || |||| | | |||||||||| |
|
|
| T |
7115334 |
gattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacctaagccattgatgatgtcagattgaataatgttaggg |
7115235 |
T |
|
| Q |
220 |
ataggaagagggaggaaaggaataatgt--gatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttc |
317 |
Q |
| |
|
||||||| | |||| ||||||||| | |||||| ||||||||||| |||||| | ||| ||||||| | | |||||||||| |
|
|
| T |
7115234 |
ataggaa---------------tgatgtccgatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttg |
7115150 |
T |
|
| Q |
318 |
gccattggagatggcgaggaggccgttacatgaaccgataaga |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7115149 |
gccattggagatggcgaggaggccgttacatgaaccgataaga |
7115107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 10348139 - 10348284
Alignment:
| Q |
36 |
aggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggagt |
135 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||| || |||| || |||||||||||| | |||| || ||| ||| |||||||||||| |
|
|
| T |
10348139 |
aggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagtaagtgagaaattctgaggagt |
10348238 |
T |
|
| Q |
136 |
ttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata |
181 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
10348239 |
ttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata |
10348284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
| Q |
119 |
aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata |
181 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
10372301 |
aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata |
10372363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 357
Target Start/End: Original strand, 10372391 - 10372533
Alignment:
| Q |
215 |
tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat |
314 |
Q |
| |
|
|||| |||||||||||||| ||||| |||| |||||||| | ||||||||||||||| || |||||| |||| | | ||| | ||||||||| |
|
|
| T |
10372391 |
taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagcgaa |
10372490 |
T |
|
| Q |
315 |
ttcgccattggagatggcgaggaggccgttacatgaaccgata |
357 |
Q |
| |
|
|| ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10372491 |
tttgccgttgcagatggcgaggaggccgttacatgaaccgata |
10372533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 12018660 - 12018515
Alignment:
| Q |
34 |
ctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgagga |
133 |
Q |
| |
|
||||||| || |||||| ||||| ||||| || || |||||||||||| ||||| | || | |||| | |||| || |||||||||||||||| | |
|
|
| T |
12018660 |
ctaggaagtactttccacgagttcgtttttgaggtatagagtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgacaa |
12018561 |
T |
|
| Q |
134 |
gtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca |
179 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
12018560 |
gtttataatcagaggacaaaggatcaaaaccgaagccgtaaacgca |
12018515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 9328917 - 9328993
Alignment:
| Q |
9 |
agcagagacaagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtg |
85 |
Q |
| |
|
|||| |||||||||| || ||||| |||||||| |||||| ||||||||||| || | |||||||||||||||| |
|
|
| T |
9328917 |
agcatagacaagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtctgacatgtg |
9328993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 11987184 - 11987124
Alignment:
| Q |
115 |
aaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa |
175 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||||||||| ||||| ||||||| |
|
|
| T |
11987184 |
aaccaagagattctgatgagtttgtaatcggatgaaaaaggatcaaagccgaatccgtgaa |
11987124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 4804 - 5172
Alignment:
| Q |
9 |
agcagagacaagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttaga |
108 |
Q |
| |
|
|||| ||||||| || |||||||| ||||||||| |||||| ||||| |||||||||||||||||||| ||||||| || |||||||||||||| |||| |
|
|
| T |
4804 |
agcaaagacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtaga |
4903 |
T |
|
| Q |
109 |
gagactaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcgga |
208 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||| | ||| ||| |
|
|
| T |
4904 |
gagactaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttcatgtcg---gat-gga |
4999 |
T |
|
| Q |
209 |
gaatg-ttagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctga |
307 |
Q |
| |
|
||| | || ||||| |||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
5000 |
gaacgaggagtaataggtagagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctga |
5099 |
T |
|
| Q |
308 |
aagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtggtgttacg |
380 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
5100 |
gagcgatttcgccgttggaaacggcgaggaggccgttacatgaaccgataagagcaatgttggtgctgttacg |
5172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 361
Target Start/End: Original strand, 26575220 - 26575549
Alignment:
| Q |
35 |
taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag |
134 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| |||||||| ||||||| || |||||||||||||| |||| || || |||||||||||||||| |
|
|
| T |
26575220 |
taggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggag |
26575319 |
T |
|
| Q |
135 |
tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgcc---gtcaatgttgaaagatcggagaatgttagggataggaagaggg |
231 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| | ||| | | |||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
26575320 |
tttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgttagggatgggaagaggg |
26575419 |
T |
|
| Q |
232 |
aggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatgg |
331 |
Q |
| |
|
|| ||||| ||||| ||| ||||| | ||| |||||||||||||| ||||||||||| |||||| |||||| ||||||| ||| |||| | ||| |||| |
|
|
| T |
26575420 |
agaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccattacgccgtgggacatgg |
26575519 |
T |
|
| Q |
332 |
cgaggaggccgttacatgaaccgataagag |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26575520 |
cgaggaggccgttacatgaaccgataagag |
26575549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 34 - 361
Target Start/End: Original strand, 37462844 - 37463174
Alignment:
| Q |
34 |
ctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgagga |
133 |
Q |
| |
|
||||||| || |||||| ||||||||||| |||| |||||||| ||||||| || |||||||||||||| |||| || | ||||||||||||||||| |
|
|
| T |
37462844 |
ctaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgagga |
37462943 |
T |
|
| Q |
134 |
gtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata--ca-ccgccgtcaatgttgaaagatcggagaatgttagggataggaagagg |
230 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| || |||| || | |||| ||| | ||||| ||||| ||| | ||| |
|
|
| T |
37462944 |
gtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatgtaagggacaggcatagg |
37463043 |
T |
|
| Q |
231 |
gaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatg |
330 |
Q |
| |
|
||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
37463044 |
gagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagata |
37463143 |
T |
|
| Q |
331 |
gcgaggaggccgttacatgaaccgataagag |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37463144 |
gcgaggaggccgttacatgaaccgataagag |
37463174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 372
Target Start/End: Complemental strand, 41966318 - 41966166
Alignment:
| Q |
220 |
ataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgc |
319 |
Q |
| |
|
||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||| || |||||| || | ||| ||| | |||| ||||||||| |
|
|
| T |
41966318 |
ataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgc |
41966219 |
T |
|
| Q |
320 |
cattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtg |
372 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
41966218 |
cattggagatgcagaggaggccgttacatgaacccagaagagtgatgttggtg |
41966166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 41966425 - 41966362
Alignment:
| Q |
116 |
accaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca |
179 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
41966425 |
accaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca |
41966362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 41966523 - 41966453
Alignment:
| Q |
18 |
aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaat |
88 |
Q |
| |
|
||||||||||||||| || ||||||| |||||| ||||| |||| ||||||| || ||||||||||||| |
|
|
| T |
41966523 |
aagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagcctgacatgtgaat |
41966453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
| Q |
118 |
caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac |
176 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||| |
|
|
| T |
29453013 |
caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac |
29452955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 29467582 - 29467429
Alignment:
| Q |
25 |
tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga |
124 |
Q |
| |
|
|||||||| |||| || || |||||||||||| |||||| |||| |||||| | |||||||||| || | ||| | ||| ||| || ||||||| |
|
|
| T |
29467582 |
tacggcatactagaaagtactttccaggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgacgaaacaagaga |
29467483 |
T |
|
| Q |
125 |
ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca |
179 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
29467482 |
ttctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca |
29467429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 274
Target Start/End: Original strand, 29423702 - 29423854
Alignment:
| Q |
122 |
agattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtt-aggga |
220 |
Q |
| |
|
||||| |||||||||||||||| | ||||| ||||||||||||||||||| |||||| | || ||| |||||| || | |||||||| |||| |
|
|
| T |
29423702 |
agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgttaggttc-agaatgttgagggg |
29423800 |
T |
|
| Q |
221 |
taggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccaga |
274 |
Q |
| |
|
|||||| ||||||| |||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
29423801 |
taggaatagggagggaagggataatgcgatgtttacagatggtagggttccaga |
29423854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
| Q |
118 |
caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa |
175 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
29443027 |
caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa |
29442970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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