View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11219_high_8 (Length: 367)
Name: NF11219_high_8
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11219_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 360
Target Start/End: Original strand, 23864138 - 23864476
Alignment:
| Q |
22 |
aaacatattatgaaatgaaatctatacaacaaaactaaatgacagataataagttctttcacaaacttgaaattctgaatctattttgaagcagaaacag |
121 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23864138 |
aaacatattatgaaatgaaatccaaacaacaaaactaaatgacagataataagttctttcacaaacttgaaattctgaatctattttgaagcagaaacag |
23864237 |
T |
|
| Q |
122 |
ctctatcatatctagccttgaaatttgcaaaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23864238 |
ctctatcatatctagccttgaaatttgcaaaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgta |
23864337 |
T |
|
| Q |
222 |
aagctttggatacttttcagcagtgaaccatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaacacagcagcaatatccacaaaa |
321 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23864338 |
aagctttggatacttttcagcagtgaaccatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaacacagcagaaatatccacaaaa |
23864437 |
T |
|
| Q |
322 |
ccaatctcctctcccccaaagaacttgtccttcatctca |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
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| T |
23864438 |
ccaatctcctctcccccaaagaacttgtccttcagctca |
23864476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 59 - 360
Target Start/End: Original strand, 23860629 - 23860930
Alignment:
| Q |
59 |
aatgacagataataagttctttcacaaacttgaaattctgaatctattttgaagcagaaacagctctatcatatctagccttgaaatttgcaaaaagagg |
158 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||| |||||||||||| |
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| T |
23860629 |
aatgacagaaaataagtgctttcacaaacttgaaattctgaatctatttagaagcagaaacaagggcatcatatttagctttgaaaaatgcaaaaagagg |
23860728 |
T |
|
| Q |
159 |
gtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtgaaccatttcaac |
258 |
Q |
| |
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||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
23860729 |
gtctctagcaggcacatgttccttcacagcaggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcattgaacaatttcaat |
23860828 |
T |
|
| Q |
259 |
cctattaagtcttgaaacaaagggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcatct |
358 |
Q |
| |
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| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||| || |
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| T |
23860829 |
tcagctatgtcttgaatcaaagggatccaaaaagctatgaacacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgttcttcagct |
23860928 |
T |
|
| Q |
359 |
ca |
360 |
Q |
| |
|
|| |
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|
| T |
23860929 |
ca |
23860930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 148 - 360
Target Start/End: Original strand, 23856676 - 23856888
Alignment:
| Q |
148 |
gcaaaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtga |
247 |
Q |
| |
|
||||| ||||| |||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||| || |||| || ||| ||||||||||| | | |
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|
| T |
23856676 |
gcaaagagaggttctctaggaggcatattttccttaacaattggatggttgagaaattcttggctccacttcgaaagtttgggacacttttcagcattca |
23856775 |
T |
|
| Q |
248 |
accatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaactt |
347 |
Q |
| |
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|| ||| ||||||| ||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| || ||||||||||| |
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| T |
23856776 |
acaattgcaaccctgttatttcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaactt |
23856875 |
T |
|
| Q |
348 |
gtccttcatctca |
360 |
Q |
| |
|
|||||||| |||| |
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|
| T |
23856876 |
gtccttcaactca |
23856888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 320
Target Start/End: Original strand, 23839890 - 23840031
Alignment:
| Q |
178 |
tccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtgaaccatttcaaccctattaagtcttgaaaca |
277 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||| ||||||||||||||| |||||||||| |||||| ||| ||||||||||| |||||||| | |
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|
| T |
23839890 |
tccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagctgtgaacaattgcaaccctattatgtcttgaacta |
23839989 |
T |
|
| Q |
278 |
aagggatccaaaaagctatgaacacagcagcaatatccacaaa |
320 |
Q |
| |
|
|||||||| | | |||| ||| |||||||||||||||||||| |
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|
| T |
23839990 |
gagggatcc-agatgctacgaaaacagcagcaatatccacaaa |
23840031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 360
Target Start/End: Original strand, 23843587 - 23843796
Alignment:
| Q |
151 |
aaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtgaacc |
250 |
Q |
| |
|
|||||||| |||||| |||| | | | |||||||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |||||| |
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|
| T |
23843587 |
aaaagaggctctctaggaggaagagtttccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttgggaacttttcagctgtgaaca |
23843686 |
T |
|
| Q |
251 |
atttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtc |
350 |
Q |
| |
|
||| || | | ||| |||||||| | ||||| |||||| |||| ||| |||||||||||||| ||||| || ||| ||||| |||||| ||||||| |
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| T |
23843687 |
attgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatcgacaaagttaaactcttctcctccaaagtacttgtc |
23843786 |
T |
|
| Q |
351 |
cttcatctca |
360 |
Q |
| |
|
||||| |||| |
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|
| T |
23843787 |
cttcagctca |
23843796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 23853367 - 23853310
Alignment:
| Q |
303 |
agcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcatctca |
360 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||| |
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|
| T |
23853367 |
agcagcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctca |
23853310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 23805770 - 23805838
Alignment:
| Q |
282 |
gatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtc |
350 |
Q |
| |
|
||||||||||| ||||| |||||||||||| || ||||||||||| |||||||| |||||||| ||||| |
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|
| T |
23805770 |
gatccaaaaagatatgatcacagcagcaatgtcaacaaaaccaatatcctctccaccaaagaatttgtc |
23805838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 23855890 - 23855838
Alignment:
| Q |
303 |
agcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttca |
355 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
23855890 |
agcagcaatatccacaaaaccaatctcttctcctccaaagaacttgtcattca |
23855838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 23801011 - 23801079
Alignment:
| Q |
285 |
ccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtcctt |
353 |
Q |
| |
|
|||||||| ||||| |||||||||||| || ||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
23801011 |
ccaaaaagatatgaccacagcagcaatgtcaacaaaaccaatatcctccccaccaaagaatttgtcctt |
23801079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 23850976 - 23850919
Alignment:
| Q |
303 |
agcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcatctca |
360 |
Q |
| |
|
|||||||||||||||||| || || || ||||| ||||||||||||||||||| |||| |
|
|
| T |
23850976 |
agcagcaatatccacaaagcctatttcttctcctccaaagaacttgtccttcagctca |
23850919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 23827314 - 23827378
Alignment:
| Q |
280 |
gggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaa |
344 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||| |||| |||||||| ||||| |||||||| |
|
|
| T |
23827314 |
gggaaccaaaaagctatgaaaactgcagcaatatcaacaattccaatctcttctccaccaaagaa |
23827378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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