View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11219_low_13 (Length: 250)
Name: NF11219_low_13
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11219_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 14725626 - 14725873
Alignment:
| Q |
11 |
cagagaataattaccctccctgcaaaacttagctcatacggtagcatagcatttg------gctttggctttggcttttcatttccaagaaagaaaccca |
104 |
Q |
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| T |
14725626 |
cagagaataattaccctccctgcaaaacttagctcatacggtagcatagcatttggctttggctttggctttggcttttgatttccaagaaagaaaccca |
14725725 |
T |
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| Q |
105 |
aaagccacactcacattcttcatttcaatcctcaaaaccctattctctcactcttcttcttcctaaacgcttccaaatatcatcaatggcttcctccagt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14725726 |
aaagccacactcacattcttcatttcaatcctcaaaaccctattctctcactcttcttcttcctaaacgcttccaaatttcatcaatggcttcctccagt |
14725825 |
T |
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| Q |
205 |
aaacgccctgctccaaccggtataaca--cttcctttctttctctttt |
250 |
Q |
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| T |
14725826 |
aaacgccctgctccaaccggtataacactcttcctttctttctctttt |
14725873 |
T |
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