View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11219_low_14 (Length: 249)
Name: NF11219_low_14
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11219_low_14 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 19415013 - 19414796
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19415013 |
caaggtctaagtgaaacaaatcagagagattaaatagctgtggtggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtga |
19414914 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19414913 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagc |
19414814 |
T |
|
| Q |
220 |
ctattactccacaggttc |
237 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19414813 |
ctattactccacaggttc |
19414796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 18165985 - 18165773
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||||| ||||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
18165985 |
caaggtctaagtgaaacaaattagagagattgaatatttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtga |
18165886 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||| | ||||| ||| || | ||||||| ||| | |||||||||| ||||| |
|
|
| T |
18165885 |
aatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagc |
18165786 |
T |
|
| Q |
220 |
ctattactccaca |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18165785 |
ctattactccaca |
18165773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 18873049 - 18873266
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| ||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
18873049 |
caaggtccaagtgaaacaaattagagagattaaatagttgtggtgaaatattcccttcaaattggttagctctcaatatgactacttctaggttttgtga |
18873148 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatag |
218 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||||||||| || ||| || || ||||| |||||| || |||||||||||||||| |
|
|
| T |
18873149 |
catcatgaatggtatgtttccagaaaattcattttctcccaaattcaaga-tctgcaactgtttccattcagagaggtgatcttgaacttcaccagatag |
18873247 |
T |
|
| Q |
219 |
cctattactccacaggttc |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18873248 |
cctattactccacaggttc |
18873266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 18147659 - 18147442
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||| ||||| |||||| || ||||||||| | |||||||||||||||||| ||| ||||||||||||| ||| |||||| ||||| |
|
|
| T |
18147659 |
caaggtctaagtgaatcaaataagagaggttgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtga |
18147560 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || ||||||| | ||||| ||||| |||||||||||| |||| ||| ||||| | | |
|
|
| T |
18147559 |
catcatgattggtatggttccagaaaattcattttctcctaagttcatgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaac |
18147460 |
T |
|
| Q |
220 |
ctattactccacaggttc |
237 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18147459 |
ctattactccacaggttc |
18147442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 19465182 - 19464970
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
19465182 |
caaggtctaagtgaaacaaaatatggagatcaaatagttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtga |
19465083 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| ||||| |||||| | ||||| ||| || |||||||| ||| | |||||||||||||||| |
|
|
| T |
19465082 |
aatcaagataggtatggttccagaaaattcattttcgcccaagttcatgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagc |
19464983 |
T |
|
| Q |
220 |
ctattactccaca |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19464982 |
ctattactccaca |
19464970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 19437787 - 19437570
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||| | |||||||||||||||||| ||| ||||||||||||| |||| |||||| ||||| |
|
|
| T |
19437787 |
caaggtctaagtgaatcaaataagagagattgaatagttgttgcggaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtga |
19437688 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || |||||| | ||||| |||| |||||||||||| |||| ||| || || | | |
|
|
| T |
19437687 |
catcatgattggtatggttccagaaaattcattttctcctaagttcatggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaac |
19437588 |
T |
|
| Q |
220 |
ctattactccacaggttc |
237 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19437587 |
ctattactccacaggttc |
19437570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 19376451 - 19376234
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||||| ||| ||||||||||||| | | |||||| ||||| |
|
|
| T |
19376451 |
caaggtctaagtgaaacaaataagagagattgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtga |
19376352 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||| || | ||||| || || |||||| || ||||||||||||||||| |
|
|
| T |
19376351 |
catcttgattggtatggttccagaaaattcattttctcccaaattcaagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagc |
19376252 |
T |
|
| Q |
220 |
ctattactccacaggttc |
237 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
19376251 |
ctattactccataggttc |
19376234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 17942783 - 17942634
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||| ||||| ||||||||||||| |||| |||||| ||||| |
|
|
| T |
17942783 |
caaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtga |
17942684 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatga |
169 |
Q |
| |
|
| ||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
17942683 |
taagctgattggtatggttccaaaaaactcattttctcccaaattcatga |
17942634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 19334838 - 19334621
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
|||||||||||| || ||||| ||||||||| ||||||||| | |||||||||||||||||| | || |||||||||||| | || |||||| ||||| |
|
|
| T |
19334838 |
caaggtctaagtaaatcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtga |
19334739 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |||||| |||||| | | ||||||||||||| ||| |
|
|
| T |
19334738 |
catccctgttggtatgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagc |
19334639 |
T |
|
| Q |
220 |
ctattactccacaggttc |
237 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
19334638 |
ctattactccataggttc |
19334621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 19381722 - 19381573
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||||||| ||||| ||||||||||||| | ||||||||| | ||| |
|
|
| T |
19381722 |
caaggtctaagtgaaacaaataagagagattgaataattgtggtggaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctga |
19381623 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatga |
169 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19381622 |
taagttcattggtatggttccagaaaattcattttctcccaaattcatga |
19381573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 25463879 - 25463667
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| || |||||||||| || |||||| ||||||||||| |||||| ||||||||||| |||| ||||||||||||| |||||||||| ||| |
|
|
| T |
25463879 |
caaggtccaaatgaaacaaataagtgagattgaatagttgtggtggaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtgg |
25463780 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
||| | ||||||||||||||| ||||||||||||||||||| ||||||| | ||||| ||||| |||||| || | ||||||||||||||||| |
|
|
| T |
25463779 |
catgttcattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagc |
25463680 |
T |
|
| Q |
220 |
ctattactccaca |
232 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
25463679 |
ctattattccaca |
25463667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 14895561 - 14895702
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| || ||||||||| || |||||| |||| |||||| |||||| ||||||||||| ||||| ||||||||| || |||| ||||| ||||| |
|
|
| T |
14895561 |
caaggtccaaatgaaacaaagaagtgagattgaataattgtggtggaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtga |
14895660 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaa |
161 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
14895661 |
catcatggttggtatagttccataaaattcattttctcccaa |
14895702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 19354544 - 19354396
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | || ||| ||||||||||| |||| ||||||||||||| ||| |||| ||||| |
|
|
| T |
19354544 |
caaggtctaagtgaaacaaattagagagattaaatagttgttgtgggatattcccttcaaattggttggctctcaatatgaccactgttaaggattgtga |
19354445 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatg |
168 |
Q |
| |
|
||| ||||||||||||||||| ||||||| || ||||||| |||||| |
|
|
| T |
19354444 |
cattttgattggtatggttccagaaaattcgttagctcccaagttcatg |
19354396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 19400555 - 19400339
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| || |||||||||| || ||||| |||| ||||| |||||||||||||||||| ||||| |||||| |||||| ||||||||||| ||||| |
|
|
| T |
19400555 |
caaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtga |
19400456 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||| ||| |||| ||||| ||||| |||||| || || |||||||||||||| |
|
|
| T |
19400455 |
aaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagc |
19400356 |
T |
|
| Q |
220 |
ctattactccacaggtt |
236 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
19400355 |
ctattacgccacaggtt |
19400339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 19393967 - 19393761
Alignment:
| Q |
31 |
tgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattg |
130 |
Q |
| |
|
||||||| || ||||| ||| ||||||||| | |||||||| ||||||||| | || ||||||||||||| ||| ||||||| |||| |||| | || |
|
|
| T |
19393967 |
tgaaacatataagagatattgaatagttgttgtggaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactg |
19393868 |
T |
|
| Q |
131 |
gtatggttccataaaattcattttctcccaaattcatgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactcc |
229 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||| ||| ||||| ||||| |||||| || || |||||||||||||| ||| ||||||||| |
|
|
| T |
19393867 |
gtatgtttccagaaaattcattttttcccaaattcatga-tctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactcc |
19393769 |
T |
|
| Q |
230 |
acaggttc |
237 |
Q |
| |
|
| |||||| |
|
|
| T |
19393768 |
ataggttc |
19393761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 18016851 - 18016634
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||| | |||||| ||||||||||| || ||||||||||||| ||| |||||| ||||| |
|
|
| T |
18016851 |
caaggtctaagtgaaacaaataagagagattgaataattgtcgtggaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtga |
18016752 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||| | ||||||| ||||| |||||||||||| |||||| |||||| | ||||| ||||| ||||| ||| || |||| ||| ||||| ||| |
|
|
| T |
18016751 |
catccctactggtatgtttccagaaaattcattttttcccaagttcatgtcctgtaattctttccagttagagatgtataatggaagttccccagacagc |
18016652 |
T |
|
| Q |
220 |
ctattactccacaggttc |
237 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
18016651 |
ttattattccacaggttc |
18016634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 18116794 - 18116645
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| || |||||||||| || |||||| |||| ||||| |||||| ||||||||||| ||||| |||||| ||||||||||||||| | |||| |
|
|
| T |
18116794 |
caaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtgg |
18116695 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatga |
169 |
Q |
| |
|
|| | | ||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
18116694 |
tatgttcaatggtatggttccagaaaattcattttctcccaagttcatga |
18116645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 17950661 - 17950445
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| || |||||||| | || ||||| |||| ||||| |||||||| ||||| ||| ||||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
17950661 |
caaggtccaaatgaaacaagtaaggaagattgaataattgtgttggaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtga |
17950562 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
| |||||||||| ||| || ||||||||||||||||||| ||||||| | ||||| ||||| |||||| || ||||||||||||||||| |
|
|
| T |
17950561 |
taaattgattggtattgttgcagaaaattcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagc |
17950462 |
T |
|
| Q |
220 |
ctattactccacaggtt |
236 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
17950461 |
ctattactccaaaggtt |
17950445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 18109224 - 18109052
Alignment:
| Q |
64 |
ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat |
163 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||| |||||||| || ||||| | |||||||||| ||| || ||||||||||||||||||| | |
|
|
| T |
18109224 |
ggaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagt |
18109125 |
T |
|
| Q |
164 |
tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggtt |
236 |
Q |
| |
|
|||||| | ||||| ||||| |||||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
18109124 |
tcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt |
18109052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 19352221 - 19352073
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||| | |||||| ||||||||||| || |||| |||||||| ||| ||||||| ||||| |
|
|
| T |
19352221 |
caaggtctaagtgaaacaaataagagagattgaataattgttgtggaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtga |
19352122 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatg |
168 |
Q |
| |
|
|||| | |||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
19352121 |
catccctaccggtatgtttccagaaaattcattttctcccaagttcatg |
19352073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 16678028 - 16677901
Alignment:
| Q |
31 |
tgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattg |
130 |
Q |
| |
|
||||||||| ||||||||| |||| ||| | |||||| | |||||||| ||||| |||||||||| || ||||||||||| ||||||||| | |||| |
|
|
| T |
16678028 |
tgaaacaaagaagagagattgaataactgtagtggaatacttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattg |
16677929 |
T |
|
| Q |
131 |
gtatggttccataaaattcattttctcc |
158 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
16677928 |
gtatggttccagaaaattcattttctcc |
16677901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 17726708 - 17726850
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| ||||| |||||| ||||||||| |||||||||| |||||||| ||||||||| | ||| ||| ||||||||| | |||||||| ||||| |
|
|
| T |
17726708 |
caaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtga |
17726807 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaa |
162 |
Q |
| |
|
|||| | ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
17726808 |
catctctactggtatgtttccagaaaattcattttctcccaaa |
17726850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 19027937 - 19028079
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| ||||| |||||| ||||||||| |||||||||| |||||||| ||||||||| | ||| ||| ||||||||| | |||||||| ||||| |
|
|
| T |
19027937 |
caaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtga |
19028036 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaa |
162 |
Q |
| |
|
|||| | ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
19028037 |
catctctactggtatgtttccagaaaattcattttctcccaaa |
19028079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 19439447 - 19439359
Alignment:
| Q |
46 |
agattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtat |
134 |
Q |
| |
|
||||| ||||||||| | |||||||| ||||||||| |||||||||||||||| || ||| ||||||| |||||||||||||||||||| |
|
|
| T |
19439447 |
agattgaatagttgttgtggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat |
19439359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 19462018 - 19461867
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctca--atatgactacttctaagttctgt |
117 |
Q |
| |
|
||||||| || |||||||||| || |||||| |||| ||||| |||||| ||||||||||| ||||| |||||| |||||| ||||||||| | ||| |
|
|
| T |
19462018 |
caaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgt |
19461919 |
T |
|
| Q |
118 |
gacatcatgattggtatggttccataaaattcattttctcccaaattcatga |
169 |
Q |
| |
|
| || | | ||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
19461918 |
ggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatga |
19461867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 18104175 - 18104037
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||| || ||||| ||||||||| ||||||||| | |||| |||||||||||| | || |||||||||||| ||||||||||| ||||| |
|
|
| T |
18104175 |
caaggtctaagaaaatcaaataagagagattgaatagttgttgcagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtga |
18104076 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcc |
158 |
Q |
| |
|
||| | |||||| |||||| |||||||||||||||| |
|
|
| T |
18104075 |
catacctactggtatagttccagaaaattcattttctcc |
18104037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 19425469 - 19425367
Alignment:
| Q |
67 |
atagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattca |
166 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||||| || ||||| | | ||||||||| |||| |||||| ||||||||||||| ||| |
|
|
| T |
19425469 |
atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca |
19425370 |
T |
|
| Q |
167 |
tga |
169 |
Q |
| |
|
||| |
|
|
| T |
19425369 |
tga |
19425367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 15536362 - 15536145
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||||||| || |||||||||||| ||| ||||||| ||||| |
|
|
| T |
15536362 |
caaggtctaagtgaaacaaataagagagattgaataattgtggcggaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtga |
15536263 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||| ||| || |||||| || || |||||||||||||| | |
|
|
| T |
15536262 |
catcatgattggtatggttccagaaaattcattttctcccaagttcatggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaa |
15536163 |
T |
|
| Q |
220 |
ctattactccacaggttc |
237 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
15536162 |
ctattattccacaggttc |
15536145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 2709759 - 2709897
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| |||||| |||| | ||||||||| |||| ||||| ||||||||||||| |||| ||||| |||||||||||| |||| || | || || |
|
|
| T |
2709759 |
caaggtccaagtgatacaacttagagagattgaataattgtgttggaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcga |
2709858 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcc |
158 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
2709859 |
catcttgattggtatagttccagaaaattcattttctcc |
2709897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 3275 - 3487
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||||||| ||| ||||| |||| |||||||| |||||||| | |||| |
|
|
| T |
3275 |
caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg |
3374 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
||| ||||||||||||||||| |||| ||||||||| |||||||||||| | ||||| |||||| |||||| || ||||||||||||| ||| |
|
|
| T |
3375 |
catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc |
3474 |
T |
|
| Q |
220 |
ctattactccaca |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3475 |
ttattactccaca |
3487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 6232 - 6020
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||||||| ||| ||||| |||| |||||||| |||||||| | |||| |
|
|
| T |
6232 |
caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg |
6133 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
||| ||||||||||||||||| |||| ||||||||| |||||||||||| | ||||| |||||| |||||| || ||||||||||||| ||| |
|
|
| T |
6132 |
catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc |
6033 |
T |
|
| Q |
220 |
ctattactccaca |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6032 |
ttattactccaca |
6020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 2744 - 2956
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||||||| ||| ||||| |||| |||||||| |||||||| | |||| |
|
|
| T |
2744 |
caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg |
2843 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc |
219 |
Q |
| |
|
||| ||||||||||||||||| |||| ||||||||| |||||||||||| | ||||| |||||| |||||| || ||||||||||||| ||| |
|
|
| T |
2844 |
catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc |
2943 |
T |
|
| Q |
220 |
ctattactccaca |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2944 |
ttattactccaca |
2956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 21444 - 21304
Alignment:
| Q |
28 |
aagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatga |
127 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||| |||||||||| ||| ||| ||||| |||| |||||||| |||||||| | |||| ||| ||| |
|
|
| T |
21444 |
aagtgaaacaaataagagagattgaataattgtggtggaatagtcc-ttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttga |
21346 |
T |
|
| Q |
128 |
ttggtatggttccataaaattcattttctcccaaattcatga |
169 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
21345 |
ttggtatggttccagaaaactcattttctcccaaattcatga |
21304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 13666121 - 13666269
Alignment:
| Q |
20 |
caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga |
119 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||| |||||| | ||||||||| || |||||||||||||| |||| ||||| |||| |
|
|
| T |
13666121 |
caaggtctaggtgaaacaaataagagagattaaatagttgtgggggaatactgccttcaaatttattttctctcaatatgaccacttgaaagtttggtga |
13666220 |
T |
|
| Q |
120 |
catcatgattggtatggttccataaaattcattttctcccaaattcatg |
168 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||| || |||||| |
|
|
| T |
13666221 |
aatcaagattgttatggttccattaaattcattttctcctaagttcatg |
13666269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 8460336 - 8460164
Alignment:
| Q |
58 |
tgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctc |
157 |
Q |
| |
|
||||| |||||| | ||||||||| |||| ||||||||||||| |||||||| | | ||||||| | ||||| ||||||||| |||||| |||||||| |
|
|
| T |
8460336 |
tgtggtggaatattgccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctc |
8460237 |
T |
|
| Q |
158 |
ccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactcca |
230 |
Q |
| |
|
|||| || || | | ||||| ||| || || ||| || || |||||||| |||||||||||||||||||| |
|
|
| T |
8460236 |
ccaagttaatcatttccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca |
8460164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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