View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11219_low_17 (Length: 228)
Name: NF11219_low_17
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11219_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3819263 - 3819478
Alignment:
| Q |
1 |
gggtcctacatagtgcttaccgccggtttggattgacacatgtcggagattgggagcgtttggaatgactgcagtgaggacgtttttgagcatagtgccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3819263 |
gggtcctacatagtgcttaccgccggtttgaattgacacatgacggagattgggagcgtttggaatgactgcagtgagggcgtttttgagcatagtgccg |
3819362 |
T |
|
| Q |
101 |
ttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtagaagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3819363 |
ttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtagaagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgt |
3819462 |
T |
|
| Q |
201 |
ttggatcggtgatgtc |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3819463 |
ttggatcggtgatgtc |
3819478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 47338614 - 47338399
Alignment:
| Q |
1 |
gggtcctacatagtgcttaccgccggtttggattgacacatgtcggagattgggagcgtttggaatgactgcagtgaggacgtttttgagcatagtgccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47338614 |
gggtcctacatagtgcttaccgccggtttgaattgacacatgacggagattgggagcgtttggaatgactgcagtgaggacgtttttgagcatagcgccg |
47338515 |
T |
|
| Q |
101 |
ttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtagaagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47338514 |
ttgatttcacagttttcagcttcggtgggacggctggcccaacagacgtagaagacatgtgtaacgtcagtgaggacggagagtttggtggtggcgtcgt |
47338415 |
T |
|
| Q |
201 |
ttggatcggtgatgtc |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47338414 |
ttggatcggtgatgtc |
47338399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 47347083 - 47346869
Alignment:
| Q |
2 |
ggtcctacatagtgcttaccgccggtttggattgacacatgtcggagattgggagcgtttggaatgactgcagtgaggacgtttttgagcatagtgccgt |
101 |
Q |
| |
|
||||||| |||||| || || |||||||| | |||||| || |||||||| || |||||||| || || || ||||| ||||| | ||| | || || |
|
|
| T |
47347083 |
ggtcctaaatagtgttttccaccggtttgaagtgacacgtggcggagattcggtgcgtttgggataacggcggtgagtacgttacgtaacattgcgctgt |
47346984 |
T |
|
| Q |
102 |
tgatttcacagttttcagcttcggtgggacggctggcccaacagacgtagaagacatgggtaacgtcagtgaggacggagagtttggtggtggcgtcgtt |
201 |
Q |
| |
|
||| |||||||||||| ||||| | ||||||| | |||| |||||||||||| || || ||||||||||| |||||||||||||| || ||||| |
|
|
| T |
47346983 |
tgacttcacagttttcggcttcagagggacggttactccaagagacgtagaagatgtgtgtgacgtcagtgagaacggagagtttggtttgggtttcgtt |
47346884 |
T |
|
| Q |
202 |
tggatcggtgatgtc |
216 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47346883 |
tggatcggtgatgtc |
47346869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University