View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11219_low_2 (Length: 724)

Name: NF11219_low_2
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11219_low_2
NF11219_low_2
[»] chr7 (1 HSPs)
chr7 (19-714)||(36964310-36965033)


Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 714
Target Start/End: Complemental strand, 36965033 - 36964310
Alignment:
Q  19 caatgaattgaaatttcagattatgaccaaattgttaaaacgttacaaatgtttttagttaaggttgtagacatcaaaattgagacacaaataactaatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  36965033 caatgaattgaaatttcagattatgaccaaattgttaaaacgttacaaatgattttaggtaaggttgtagacatcaaaattgagacacaaataactaatg 36964934  T
Q  119 ttgcatatttgtcatttttgtaacctatacctttacgaaannnnnnnnnnnnnnnggatttt-acatgtgaaaatatttagacatatcaatctgaaaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||                |||||| |||||||||||||||||||||||||||||||||||||    
T  36964933 ttgcatatttgtcatttttgtaacctatacctttacgaaaccccccaaaaaaaaaagatttttacatgtgaaaatatttagacatatcaatctgaaaagg 36964834  T
Q  218 gattttaacagctataaatttcgagttaaatatatcaccgtggcagggtcataatcagtaatctcggcaagctctgaccatttaatacgaactttcttcc 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36964833 gattttaacagctataaatttcgagttaaatatatcaccg-ggcagggtcataatcagtaatctcggcaagctctgaccatttaatacgaagtttcttcc 36964735  T
Q  318 caat-aatatatctaaagttgctgctttagcaggttcaacttgaacagaatgatcctccacagacttcactgaagataaaaacccggccaatggttgatc 416  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36964734 caatcaatatatctaaagttgctgctttagcaggttcaacttgaacagaatgatcctccacagacttcactgaagataaaaacccggccaatggttgatc 36964635  T
Q  417 ctggacccaaaatcggtagcagcaaaacaaaagaaaaatagacctcatcaatacatgtttttcctttgcatttctctaatataaagaattaaagctagcc 516  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36964634 ctggacccaaaattggtagcagcaaaacaaaagaaaaatagacctcatcaatacatgtttttcctttgcatttctctaatataaagaattaaagctagcc 36964535  T
Q  517 tatt------------aacgtaattctctacaatataaaaaattgagaccccaaggcaaaccgtgactacaac---------agtgttgatcagtggctg 595  Q
    ||||            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         ||||||||||||||||||    
T  36964534 tattaatgccacactgaacgtaattctctacaatataaaaaattgcgaccccaaggcaaaccgtgactacaacagtgttgaaagtgttgatcagtggctg 36964435  T
Q  596 ctgttctgagttgtcacatcattaatgcatgaatactcatatacatgatca------tattcacatcatatacaagacaatgttgattaccatttaagaa 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  36964434 ctgttctgagttgtcacatcattaatgcatgaatactcatatacatgatcatattattattcacatcatatacaagacaatgttgattaccatttaagaa 36964335  T
Q  690 tcttgaaagtccatttgtatctctg 714  Q
    |||||||||||||||||||||||||    
T  36964334 tcttgaaagtccatttgtatctctg 36964310  T

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