View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11219_low_3 (Length: 668)

Name: NF11219_low_3
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11219_low_3
NF11219_low_3
[»] chr1 (10 HSPs)
chr1 (326-647)||(44642252-44642577)
chr1 (369-519)||(44668963-44669113)
chr1 (25-124)||(20186841-20186940)
chr1 (25-124)||(30339636-30339735)
chr1 (25-124)||(51787272-51787371)
chr1 (11-124)||(43740393-43740506)
chr1 (125-227)||(44642064-44642156)
chr1 (369-509)||(44683934-44684074)
chr1 (60-118)||(9673004-9673062)
chr1 (388-514)||(44660893-44661019)
[»] chr8 (2 HSPs)
chr8 (9-124)||(4076928-4077043)
chr8 (9-119)||(3780343-3780453)
[»] chr4 (5 HSPs)
chr4 (9-124)||(52055132-52055247)
chr4 (9-124)||(1158239-1158354)
chr4 (388-514)||(29340642-29340768)
chr4 (388-514)||(29353597-29353723)
chr4 (25-104)||(49866670-49866749)
[»] chr5 (6 HSPs)
chr5 (9-124)||(25955944-25956059)
chr5 (25-128)||(1501369-1501472)
chr5 (9-124)||(42250116-42250231)
chr5 (25-123)||(38280273-38280371)
chr5 (16-125)||(7886354-7886463)
chr5 (57-124)||(38951381-38951448)
[»] chr7 (11 HSPs)
chr7 (9-125)||(2286457-2286573)
chr7 (9-124)||(25185917-25186032)
chr7 (9-126)||(7527248-7527365)
chr7 (25-125)||(11765706-11765806)
chr7 (9-117)||(23844642-23844750)
chr7 (25-124)||(496683-496782)
chr7 (25-124)||(48057699-48057798)
chr7 (9-124)||(40855135-40855251)
chr7 (25-125)||(31427260-31427362)
chr7 (25-124)||(42535214-42535313)
chr7 (62-125)||(4649474-4649537)
[»] chr3 (6 HSPs)
chr3 (9-125)||(47940825-47940941)
chr3 (9-125)||(49786392-49786508)
chr3 (25-124)||(8152977-8153078)
chr3 (25-124)||(29836770-29836868)
chr3 (25-124)||(8436896-8436995)
chr3 (25-118)||(48778973-48779066)
[»] chr6 (1 HSPs)
chr6 (9-124)||(33594503-33594618)
[»] chr2 (2 HSPs)
chr2 (25-124)||(13922185-13922284)
chr2 (26-121)||(11828960-11829055)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 326 - 647
Target Start/End: Original strand, 44642252 - 44642577
Alignment:
Q  326 caatgattttagtgaaaagaaagttgatgcaataataatattgactcacttgtttaagaagtggcagcatcattccaaataaagctccatcacaatgaat 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44642252 caatgattttagtgaaaagaaagttgatgcaataataatattgactcacttgtttaagaagtggcagcatcattccaaataaagctccgtcacaatgaat 44642351  T
Q  426 atagaatctatcacgagaaaaaccactttcctcaagtgtctgtattaccatatcaatgttatcaatagctcctttcacagttgttcctaattaaacattt 525  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44642352 atagaatcgatcacgagaaaaaccactttcctcaagtgtctgtattactatatcaatgttatcaatagctcctttcacagttgttcctaattaatcattt 44642451  T
Q  526 gtcccaaaataagaagaatattttttagcttagccaattaaattaaccgtgtacatgttctattataattaactattgtgggtgcatgtgaacgtgtt-- 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||      
T  44642452 gtcccaaaataagaagaatattttttagcttagccaattaaattaattgtgtacatgttctattataattaactattgtgggtgcatgtgaacgtgtttt 44642551  T
Q  624 --ttagttgtgaaatattaaaggatt 647  Q
      ||||||||||||||||||||||||    
T  44642552 aattagttgtgaaatattaaaggatt 44642577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 369 - 519
Target Start/End: Original strand, 44668963 - 44669113
Alignment:
Q  369 actcacttgtttaagaagtggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgt 468  Q
    |||||| |||| ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||| |||| |||||| |||||||| ||||| |      
T  44668963 actcacctgttcaagaaatggcagcatcattccgaacaaagctccatcacaatgaatatagaaacgatcgcgaggaaaacctctttcctccagtgtttca 44669062  T
Q  469 attaccatatcaatgttatcaatagctcctttcacagttgttcctaattaa 519  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  44669063 attaccatatcaatgttatcaatagctcctttcatggttgatcctaattaa 44669113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 20186841 - 20186940
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| | ||||||  || |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  20186841 aagagagacaaagtgtttgtgggatctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 20186940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 30339735 - 30339636
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| ||||||||  || |||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  30339735 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtagaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 30339636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 51787371 - 51787272
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| |||||||   || |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  51787371 aagagagacaaagtgtttgtggggtctagagcacgtgtcacatgtttatgtgaaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 51787272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 43740393 - 43740506
Alignment:
Q  11 gatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgc 110  Q
    |||| |||| ||| |||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||  | |||||||||| |    
T  43740393 gatggatgataaggaagagagacaaagtgtttgtgaggtttaggccacatatcacatgtttgtgtggaggtttaagtgtgcatgtgatctatggatgttc 43740492  T
Q  111 atgtatcaccactc 124  Q
    ||| ||||||||||    
T  43740493 atggatcaccactc 43740506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 44642064 - 44642156
Alignment:
Q  125 aaaagtgtatttt-ctgctgtgtactttcaacctgattttggaaggtgtgaaaacatcccctctttatttacttatttatttattttcaacttgctaatt 223  Q
    ||||||||||||| ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44642064 aaaagtgtatttttctgctgtgtactttcaacctgatt-----------gaaaacatcccctctttatttacttatttatttattttcaacttgctaatt 44642152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 369 - 509
Target Start/End: Original strand, 44683934 - 44684074
Alignment:
Q  369 actcacttgtttaagaagtggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgt 468  Q
    |||||||||||| | ||  |||| ||| |||||||||| |||||||||||| ||||| ||||||| |||||||| |||||||| || ||  ||||| |||    
T  44683934 actcacttgttttataaaaggcaacataattccaaatagagctccatcacagtgaatgtagaatcgatcacgagtaaaaccacatttctttagtgtttgt 44684033  T
Q  469 attaccatatcaatgttatcaatagctcctttcacagttgt 509  Q
    ||||| | |||||  | ||||||| ||||||||| ||||||    
T  44684034 attacaagatcaagatcatcaatacctcctttcatagttgt 44684074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 9673004 - 9673062
Alignment:
Q  60 tgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatca 118  Q
    |||||||||||| |||||||||||||||||||||||||||||| | ||| |||||||||    
T  9673004 tgtcacatgtttatgtggaggtttaagtgtgtatgccacctataggtgtacatgtatca 9673062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 514
Target Start/End: Original strand, 44660893 - 44661019
Alignment:
Q  388 ggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgtattaccatatcaatgttat 487  Q
    |||| ||| |||||||||| |||||||||||| ||||| ||||||| |||||||| |||||||| ||  |  ||||| |||||||| | |||||  | ||    
T  44660893 ggcaacataattccaaatagagctccatcacagtgaatgtagaatcgatcacgagtaaaaccacatttatttagtgtttgtattacaagatcaagatcat 44660992  T
Q  488 caatagctcctttcacagttgttccta 514  Q
    ||||| ||||||||| |||||| ||||    
T  44660993 caatacctcctttcaaagttgtcccta 44661019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 4076928 - 4077043
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  4076928 gagatggatgaaaaggaagagagacaaattgtttgtggggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatgggtat 4077027  T
Q  109 gcatgtatcaccactc 124  Q
    |||||||||| |||||    
T  4077028 gcatgtatcatcactc 4077043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 3780343 - 3780453
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||| | |||||||||||| ||||| |  ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3780343 gagatggatgaaagggaagagagacaaagtgtttctcgggtttaggctacatgtcacatgtttgtgtggaggtttgagtgtgtatgccacctatggatgt 3780442  T
Q  109 gcatgtatcac 119  Q
     ||||||||||    
T  3780443 acatgtatcac 3780453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 52055132 - 52055247
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  52055132 gagatggatgaaaaggaagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgt 52055231  T
Q  109 gcatgtatcaccactc 124  Q
    ||||||||||||||||    
T  52055232 gcatgtatcaccactc 52055247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 1158239 - 1158354
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    ||||||||||||| | ||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| |||  |||| |||||    
T  1158239 gagatgaatgaaagggaagagagacaaaatgtttgtagggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtacgccttctatcgatgt 1158338  T
Q  109 gcatgtatcaccactc 124  Q
    |||||||||| |||||    
T  1158339 gcatgtatcatcactc 1158354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 514
Target Start/End: Complemental strand, 29340768 - 29340642
Alignment:
Q  388 ggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgtattaccatatcaatgttat 487  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||  |||||||| |||||||| ||  || ||||| |||||||| | |||||  | ||    
T  29340768 ggcaacatgattccaaatagagctccatcacaatgaatatagaattgatcacgagtaaaaccacatttgtctagtgtttgtattacaagatcaagatcat 29340669  T
Q  488 caatagctcctttcacagttgttccta 514  Q
    ||||  | ||||||| |||||| ||||    
T  29340668 caatcccacctttcaaagttgtcccta 29340642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 514
Target Start/End: Complemental strand, 29353723 - 29353597
Alignment:
Q  388 ggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgtattaccatatcaatgttat 487  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||  |||||||| |||||||| ||  || ||||| |||||||| | |||||  | ||    
T  29353723 ggcaacatgattccaaataaagctccatcacaatgaatgtagaattgatcacgagtaaaaccacatttgtctagtgtttgtattacaagatcaagatcat 29353624  T
Q  488 caatagctcctttcacagttgttccta 514  Q
    ||||  | ||||||| |||||| ||||    
T  29353623 caatcccacctttcaaagttgtcccta 29353597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 49866749 - 49866670
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatgg 104  Q
    |||||||||||| ||||| || |||||| |  ||||||||||| |||||||| ||||||||| |||||| ||||||||||    
T  49866749 aagagagacaaagtgtttatgtggtctaagtcacatgtcacatatttgtgtgaaggtttaagcgtgtataccacctatgg 49866670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 25955944 - 25956059
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  |||    
T  25955944 gagatggatgaaaaggaagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaaatgtgtatgccacctatgagtgt 25956043  T
Q  109 gcatgtatcaccactc 124  Q
    ||||||||||||||||    
T  25956044 gcatgtatcaccactc 25956059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 1501369 - 1501472
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| ||| | || |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  1501369 aagagagacaaagtgtatatggggtctaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgtcacctatggatctgcatgtatcaccactc 1501468  T
Q  125 aaaa 128  Q
    ||||    
T  1501469 aaaa 1501472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 42250231 - 42250116
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||| |||| ||  ||||| |||    
T  42250231 gagatggatgaaaaggaagagagacaaagtgtttgtggggtctaagccacatgtcacatgtttgtgtggaggtttaagtgtctatgtcatttatgggtgt 42250132  T
Q  109 gcatgtatcaccactc 124  Q
    ||||||||||||||||    
T  42250131 gcatgtatcaccactc 42250116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 38280273 - 38280371
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccact 123  Q
    |||||||||||| |||||||| ||||||||  || |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  38280273 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtataccacctatggatgtacatgtatcaccact 38280371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 7886463 - 7886354
Alignment:
Q  16 atgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgta 115  Q
    |||||| | |||||||||||||| | |||| | | ||||| |||||||||||||||||||||||||||||||||||||| |||||||   | |||||| |    
T  7886463 atgaaagggaagagagacaaaatatatgtgggatttaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctataagtatgcatgaa 7886364  T
Q  116 tcaccactca 125  Q
    ||||||||||    
T  7886363 tcaccactca 7886354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 38951448 - 38951381
Alignment:
Q  57 acatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||| |||||| ||||||| ||| ||||||| | ||||||| ||||| |||||||||||||| |||||    
T  38951448 acatatcacatatttgtgttgagatttaagtatatatgccatctatgaatgtgcatgtatcatcactc 38951381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 9e-38; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 2286573 - 2286457
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||    
T  2286573 gagatggatgaaaaggaagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgt 2286474  T
Q  109 gcatgtatcaccactca 125  Q
    ||||||||||| |||||    
T  2286473 gcatgtatcactactca 2286457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 25185917 - 25186032
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||| ||| | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  25185917 gagatggatgaaaaggaagagagataaagtatttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctatgagtgt 25186016  T
Q  109 gcatgtatcaccactc 124  Q
    ||||| ||||||||||    
T  25186017 gcatgcatcaccactc 25186032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 7527248 - 7527365
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| ||||||| ||| ||||||||| ||||| ||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |    
T  7527248 gagatggatgaaaaaaaaaagagacaaagtgtttatggagtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaatgaatat 7527347  T
Q  109 gcatgtatcaccactcaa 126  Q
    |||||||||||| |||||    
T  7527348 gcatgtatcacccctcaa 7527365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 11765806 - 11765706
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| |||| |||  || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11765806 aagagagacaaagtgtttgtggggtcaaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 11765707  T
Q  125 a 125  Q
    |    
T  11765706 a 11765706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 23844750 - 23844642
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||  ||||||||||||||| ||||||| ||| ||||||||||  ||||||||||||    
T  23844750 gagatggatgaaaaggaagagagacaaagtgtttgtgaggtctagggcacatgtcacatgtttatgtggagatttgagtgtgtatgttacctatggatgt 23844651  T
Q  109 gcatgtatc 117  Q
    |||||||||    
T  23844650 gcatgtatc 23844642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 496782 - 496683
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| ||||||||  || ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  496782 aagagagacaaagtgtttgtggggtctaggacacgtgtcatatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 496683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 48057699 - 48057798
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| ||||||||  || |||||||||||| |||||| |||||| | |||||||||||||||| ||| |||||||||||||||    
T  48057699 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaagtttaaatatgtatgccacctatgggtgtacatgtatcaccactc 48057798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 40855135 - 40855251
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggct-acatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatg 107  Q
    ||||||||||||| | || ||||||||| |||||||||||||||| |  ||| ||||||||||||||| ||||||||||||| ||| |||| |||||||     
T  40855135 gagatgaatgaaagggaaaagagacaaagtgtttgtgaggtctagacccacaggtcacatgtttgtgtagaggtttaagtgtatataccacatatggata 40855234  T
Q  108 tgcatgtatcaccactc 124  Q
    |||||| |||| |||||    
T  40855235 tgcatgcatcatcactc 40855251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 31427260 - 31427362
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgc--cacctatggatgtgcatgtatcaccac 122  Q
    |||||||||||| ||||||||  |||||  | ||||||||||| ||| || |||||||||| | |||||||  |||||||||||||||||||||||||||    
T  31427260 aagagagacaaagtgtttgtggagtctaaaccacatgtcacatatttatgcggaggtttaattatgtatgccacacctatggatgtgcatgtatcaccac 31427359  T
Q  123 tca 125  Q
    |||    
T  31427360 tca 31427362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 42535214 - 42535313
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| | | || |  || |||||||||||| |||||||||||||||||||||| ||||||||  ||| ||| ||||| |||||    
T  42535214 aagagagacaaagtgtttgtgggatataagacacgtgtcacatgtttatgtggaggtttaagtgtgtatgtcacctatgagtgtacatatatcatcactc 42535313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 4649474 - 4649537
Alignment:
Q  62 tcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactca 125  Q
    |||||| ||| ||||||| ||||| |||||||||||| |||| || ||||| ||||||||||||    
T  4649474 tcacatatttatgtggagttttaaatgtgtatgccacttatgaatttgcatctatcaccactca 4649537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 47940941 - 47940825
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||    
T  47940941 gagatggatgaaaaggaagagagacaaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgt 47940842  T
Q  109 gcatgtatcaccactca 125  Q
    ||||||||||| |||||    
T  47940841 gcatgtatcactactca 47940825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 49786508 - 49786392
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||||||||||   |||||||||||| |||||||| ||||||||  || |||||||||||| |||||||||||||||||||||||||||||||| |||    
T  49786508 gagatgaatgaaagagaagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgt 49786409  T
Q  109 gcatgtatcaccactca 125  Q
     ||||||||||| ||||    
T  49786408 acatgtatcaccgctca 49786392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 8153078 - 8152977
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgc--atgtatcaccac 122  Q
    |||||||||||| ||||||||  |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| | |||||  ||||||||||||    
T  8153078 aagagagacaaagtgtttgtggagtctaggccacatgtcacatgtttatgtggaggtttaggtgtgtatgccacctataggtgtgcatatgtatcaccac 8152979  T
Q  123 tc 124  Q
    ||    
T  8152978 tc 8152977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 29836770 - 29836868
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| | |||||| ||| ||||  | |||| |||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  29836770 aagagagacaaagt-tttgtggggtgtaggtcatatgttacatatttgtgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtatcaccactc 29836868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 8436896 - 8436995
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| |||||| |  || ||||| || ||| ||| ||||||||| |||||||||||||||||| ||| ||| |||||||||||    
T  8436896 aagagagacaaagtgtttgtggggtctaagacacgtgtcatatatttatgtagaggtttaaatgtgtatgccacctatgggtgtacatatatcaccactc 8436995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 48778973 - 48779066
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatca 118  Q
    |||||||| ||| ||||| ||  |||||| | ||||||||||| ||| |||||| |||||| || ||||||||||||| | |||||||||||||    
T  48778973 aagagagataaagtgtttatggagtctagaccacatgtcacatatttatgtggatgtttaaatgagtatgccacctataggtgtgcatgtatca 48779066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 33594503 - 33594618
Alignment:
Q  9 gagatgaatgaaaagaaagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgt 108  Q
    |||||| |||||||| |||||||||||| | |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  33594503 gagatggatgaaaaggaagagagacaaagtatttgtggggtctaggccacatgtcacatgtttgtgtgaaggtttaagtgtgtatgccaccaatggatgt 33594602  T
Q  109 gcatgtatcaccactc 124  Q
    ||||||||||| ||||    
T  33594603 gcatgtatcactactc 33594618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 13922284 - 13922185
Alignment:
Q  25 aagagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcaccactc 124  Q
    |||||||||||| |||||||| ||||||||  || ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13922284 aagagagacaaagtgtttgtggggtctaggacacgtgtcacatgtttacgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 13922185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 11829055 - 11828960
Alignment:
Q  26 agagagacaaaatgtttgtgaggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatggatgtgcatgtatcacca 121  Q
    |||||| |||| |||||||| ||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  11829055 agagaggcaaagtgtttgtggggtctaggacacatgtcacatatttatgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtctcacca 11828960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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