View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11219_low_4 (Length: 647)
Name: NF11219_low_4
Description: NF11219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11219_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 3822255 - 3822143
Alignment:
| Q |
165 |
tgagatagagactaactagggtgcttcacagtagattctaactaagcaattaatcatgaacaaacaagacaaaacataccaaacaaacatcatcagaacc |
264 |
Q |
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| T |
3822255 |
tgagatagagactaactagggtgcttcacagtagattctaactaagcaattaatcatgaacaaacaagacaaaacataccaaacaaacat-atcagaacc |
3822157 |
T |
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| Q |
265 |
aaaactaagagatt |
278 |
Q |
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|||||||||||||| |
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| T |
3822156 |
aaaactaagagatt |
3822143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 3822353 - 3822285
Alignment:
| Q |
16 |
accaaaaatgatttgattcaaattattcaaggcaatcaattgaatcgaatcaaagtctttgagaaggaa |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822353 |
accaaaaatgatttgattcaaattattcaaggcaatcaattgaatcgaatcaaagtctttgagaaggaa |
3822285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 22412163 - 22412051
Alignment:
| Q |
113 |
acacctaacttgaaactaatgaaacggttcataagacgtcatcatagacgactgagatagagactaactagggtgcttcacagtagattctaactaagca |
212 |
Q |
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| T |
22412163 |
acacctaacttgatcctaatgcaaaggttcataagacatcatcata-atatttgagatataaactaactagggtgcttaacaata--ttcttactaagca |
22412067 |
T |
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| Q |
213 |
attaatcatgaacaaa |
228 |
Q |
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| T |
22412066 |
attaatcaagaacaaa |
22412051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 17053142 - 17053229
Alignment:
| Q |
203 |
taactaagcaattaatcatgaacaaacaagacaaaacat--accaaacaaacatcatcagaaccaaaactaagagattaaaggagcaa |
288 |
Q |
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|||||||| ||||| | |||||||||||| ||||||||| |||||||||| |||||| ||| ||||||||| |||||| |||||| |
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| T |
17053142 |
taactaagaaattacttatgaacaaacaacacaaaacatcaaccaaacaaaagtcatcaaaacataaactaagaaattaaaagagcaa |
17053229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 103 - 264
Target Start/End: Original strand, 30557486 - 30557647
Alignment:
| Q |
103 |
ataacaagaaacacctaacttgaaactaatgaaacggttcataagacgtcatcatagacgactgaga-tagagactaactagggtgcttcacagtagatt |
201 |
Q |
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||||||||| ||||||||||||| || |||| || |||||||||| ||||||||||||| | || | | |||||||||||||||||||| ||| |
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| T |
30557486 |
ataacaagagacacctaacttgataccaatgcaaatattcataagacatcatcatagacgattttgaggaaacactaactagggtgcttcaca----att |
30557581 |
T |
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| Q |
202 |
ctaactaagcaattaatcatgaaca-aacaagacaaaacat--accaaacaaacatcatcagaacc |
264 |
Q |
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||| ||||||||||||||||||| | ||| ||||||||| ||| |||||| ||||||| |||| |
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|
| T |
30557582 |
tcaaccaagcaattaatcatgaacacatcaacacaaaacatcaacctaacaaatatcatcaaaacc |
30557647 |
T |
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