View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1121_high_1 (Length: 820)

Name: NF1121_high_1
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1121_high_1
NF1121_high_1
[»] chr1 (18 HSPs)
chr1 (74-520)||(5466402-5466848)
chr1 (652-791)||(5467175-5467314)
chr1 (569-755)||(3491413-3491593)
chr1 (569-756)||(298192-298376)
chr1 (569-635)||(48022822-48022888)
chr1 (569-749)||(21276540-21276715)
chr1 (569-749)||(38788845-38789021)
chr1 (650-754)||(8550368-8550472)
chr1 (569-635)||(52141476-52141542)
chr1 (570-704)||(5198838-5198969)
chr1 (562-634)||(15881094-15881166)
chr1 (569-636)||(943194-943261)
chr1 (559-634)||(12521397-12521472)
chr1 (599-636)||(5466848-5466885)
chr1 (680-749)||(47370427-47370496)
chr1 (583-632)||(48722691-48722740)
chr1 (569-605)||(27211442-27211478)
chr1 (569-632)||(47370292-47370355)
[»] chr8 (16 HSPs)
chr8 (569-755)||(30069701-30069883)
chr8 (569-750)||(11257854-11258029)
chr8 (569-722)||(26014845-26014993)
chr8 (558-634)||(9402858-9402934)
chr8 (560-632)||(38869869-38869941)
chr8 (662-762)||(37456102-37456202)
chr8 (648-743)||(7107505-7107600)
chr8 (569-632)||(36660694-36660757)
chr8 (570-632)||(5895998-5896060)
chr8 (569-635)||(36068413-36068479)
chr8 (578-635)||(8072448-8072505)
chr8 (648-719)||(1042780-1042851)
chr8 (648-719)||(16037310-16037381)
chr8 (569-632)||(31410983-31411046)
chr8 (570-613)||(40651740-40651783)
chr8 (569-607)||(31451374-31451412)
[»] chr3 (22 HSPs)
chr3 (569-751)||(13863589-13863767)
chr3 (569-635)||(37238766-37238832)
chr3 (569-635)||(972520-972586)
chr3 (648-751)||(36923581-36923684)
chr3 (648-754)||(7681616-7681722)
chr3 (569-635)||(28963362-28963428)
chr3 (652-725)||(13433736-13433809)
chr3 (560-635)||(28945929-28946004)
chr3 (648-749)||(21490370-21490471)
chr3 (571-632)||(43310565-43310626)
chr3 (655-699)||(50524321-50524365)
chr3 (662-753)||(43310338-43310429)
chr3 (569-631)||(52915456-52915518)
chr3 (657-754)||(28451800-28451897)
chr3 (569-605)||(38773649-38773685)
chr3 (569-605)||(51980692-51980728)
chr3 (569-632)||(35982370-35982433)
chr3 (569-632)||(52378685-52378748)
chr3 (82-127)||(4565659-4565705)
chr3 (655-705)||(8702079-8702129)
chr3 (655-705)||(9053966-9054016)
chr3 (570-632)||(46748980-46749042)
[»] chr2 (11 HSPs)
chr2 (569-751)||(14776270-14776447)
chr2 (648-756)||(9374021-9374129)
chr2 (569-719)||(40534250-40534394)
chr2 (569-632)||(10500420-10500483)
chr2 (569-753)||(32227431-32227612)
chr2 (648-724)||(30326106-30326182)
chr2 (569-754)||(35327751-35327931)
chr2 (569-626)||(27414051-27414108)
chr2 (656-749)||(33830302-33830395)
chr2 (585-634)||(43305604-43305653)
chr2 (560-605)||(44721342-44721387)
[»] chr7 (11 HSPs)
chr7 (569-754)||(38073572-38073752)
chr7 (569-719)||(20884456-20884604)
chr7 (569-634)||(39854086-39854151)
chr7 (569-632)||(38652637-38652700)
chr7 (569-632)||(45513091-45513154)
chr7 (571-632)||(8073536-8073597)
chr7 (650-699)||(11667046-11667095)
chr7 (648-750)||(21148389-21148491)
chr7 (569-606)||(11667120-11667157)
chr7 (569-603)||(38073709-38073743)
chr7 (672-749)||(38652729-38652806)
[»] chr4 (14 HSPs)
chr4 (569-754)||(22409329-22409509)
chr4 (568-755)||(32318510-32318691)
chr4 (569-700)||(20574856-20574985)
chr4 (569-755)||(30537925-30538107)
chr4 (569-636)||(38794104-38794171)
chr4 (648-753)||(10109215-10109320)
chr4 (652-719)||(14958401-14958468)
chr4 (569-634)||(53039379-53039444)
chr4 (570-625)||(4960354-4960409)
chr4 (652-750)||(38793721-38793819)
chr4 (650-709)||(4960430-4960489)
chr4 (569-635)||(30255186-30255255)
chr4 (569-603)||(17268776-17268810)
chr4 (583-632)||(14136576-14136625)
[»] scaffold0154 (1 HSPs)
scaffold0154 (648-755)||(36406-36513)
[»] scaffold0102 (1 HSPs)
scaffold0102 (648-749)||(21233-21334)
[»] chr6 (3 HSPs)
chr6 (569-630)||(33972591-33972652)
chr6 (569-618)||(3213646-3213695)
chr6 (569-634)||(12141692-12141757)
[»] scaffold0007 (1 HSPs)
scaffold0007 (569-754)||(260294-260474)
[»] chr5 (6 HSPs)
chr5 (652-719)||(25836942-25837009)
chr5 (569-636)||(25837429-25837496)
chr5 (590-635)||(21369224-21369269)
chr5 (648-719)||(10044224-10044295)
chr5 (559-605)||(28085307-28085353)
chr5 (652-704)||(5402771-5402824)
[»] scaffold0061 (1 HSPs)
scaffold0061 (569-635)||(9076-9142)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 74 - 520
Target Start/End: Original strand, 5466402 - 5466848
Alignment:
Q  74 tctccaagaatatacaacaaattgaatcgatgataaaatgcaatcaacatgattcttgattgcaatttctaatgtgattgaacaaaacaactaaatcaaa 173  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||    
T  5466402 tctccaaaaatatacaacaaattgaatcgatgataaaatgcaatcaacatgattgttgattgcaatttctaatgtgatttaacaaaacaattaaatcaaa 5466501  T
Q  174 attattaagaaaatggatttgctatagatcaattacattatcaaattctacgatcaaacatatacataatcatcaagttttaatttgaatatacgaaaaa 273  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5466502 attattaagaaaatggatttgctatagatcaatcacattatcaaattctacaatcaaacatatacataatcatcaagttttaatttgaatatacgaaaaa 5466601  T
Q  274 tgtagtttacacttaaaaataatcatccttttagctgacctcgtcagacaagcaattagactattaggcgaggaagcatccctgccgatttaaagcggaa 373  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5466602 tgtagtttatacttaaaaataatcattcttttagctgacctcgtcagacaaacaattagactattaggcgaggaagcatccctgccgatttaaagcggaa 5466701  T
Q  374 attttgttatgcttcatcatacaattatgtccaaacaatacaacaaaatctatgttacatttcattattaattttgttctattccggtatgttatattga 473  Q
    ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  5466702 attctgttatgcttcgtcatacaattatgtccaaacaatacaacgaaatctatgttacattttgttattaattttgttctattccggtatgttctattga 5466801  T
Q  474 gttccatcaatctaaaccgagctttgagctctccttattacaatatg 520  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  5466802 gttccatcaatttaaaccgaactttgagctctccttattacaatatg 5466848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 652 - 791
Target Start/End: Original strand, 5467175 - 5467314
Alignment:
Q  652 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcc 751  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||| ||||||||||     
T  5467175 tattaaacaatttgaataacaaattcacacaatttccaatacataattactatcaatgaaattcttaatatgtgttctaagggcacaaattaatatttct 5467274  T
Q  752 cttttctaattacactattgatcataatggtaagagtagt 791  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5467275 cttttctaattacactattgatcataatggtaagagtagt 5467314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 569 - 755
Target Start/End: Original strand, 3491413 - 3491593
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||            ||||||||||| | ||||||     
T  3491413 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatg------aaaaaattaatattaaaaattttgagc 3491506  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 755  Q
    || |||||  ||||||||||||||||||||| |||| ||||  |||||||| || ||  |||| |||||||||||| ||||||||||    
T  3491507 aataaattatcacaatttccaatacataatttctattagtggaattcttaacatttgccctaagggcacaagttaacatttcccttt 3491593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 569 - 756
Target Start/End: Complemental strand, 298376 - 298192
Alignment:
Q  569 gttaacttgtgccgttagggca-catgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgag 667  Q
    ||||||||||||| ||| |||| ||||||||||||||||| |||||||||| | ||||||||||||||            ||| |||||||||| |||||    
T  298376 gttaacttgtgcccttaaggcaacatgttaagcattaatttcattccattaatagtaagaatttaatg----aaaaaaaattagtattaaacaacttgag 298281  T
Q  668 taacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctttt 756  Q
    ||| ||||| ||||||||||||||||| ||||||||| ||||  |||||||| || ||  |||| |||||||||||| |||||||||||    
T  298280 taataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaagggcacaagttaacatttccctttt 298192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 569 - 635
Target Start/End: Complemental strand, 48022888 - 48022822
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  48022888 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatg 48022822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 569 - 749
Target Start/End: Original strand, 21276540 - 21276715
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||            |||||||||||||  ||| ||    
T  21276540 gttaacttgtgcccttaggacacatgttaagcattaatttcattctattaatggtaagaatttaatg-----aaaaaaattaatattaaacatcttgcgt 21276634  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 749  Q
     | ||||| ||||||||| |||||||||||| |||| ||||  |||||||  || ||  |||| | |||||||||||||||    
T  21276635 gataaattaacacaattttcaatacataatttctattagtggaattcttatcatgtgccctaaggacacaagttaatattt 21276715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 569 - 749
Target Start/End: Original strand, 38788845 - 38789021
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||| | ||| |||||||||||| |||||||| ||||| |||| | ||||||||||||||            ||| |||||||||| || |||    
T  38788845 gttaacttgtgtcattatggcacatgttaaacattaatttcattctattaatagtaagaatttaatg---aatttttttttagtattaaacaacttaagt 38788941  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 749  Q
    || ||||| ||||||||||||||||||||||||||| ||| | |||||||| ||||  | ||| |||||||||||| ||||    
T  38788942 aataaattaacacaatttccaatacataattactattagtaaaattcttaacatatact-taagggcacaagttaacattt 38789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 754
Target Start/End: Original strand, 8550368 - 8550472
Alignment:
Q  650 aatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 749  Q
    |||||||||| |||| || || ||||| |||||||||||||||||||||| |||| ||||  |||||||| ||||||  ||  |||||||||||| ||||    
T  8550368 aatattaaactatttaagcaataaattaacacaatttccaatacataatttctattagtggaattcttaacatatgtcatacgggcacaagttaacattt 8550467  T
Q  750 ccctt 754  Q
    |||||    
T  8550468 ccctt 8550472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 52141476 - 52141542
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||||| || ||||||| ||||||||    
T  52141476 gttaacttgtgcccttagggcatatgttaagcattaatttcattccactaatggtaagtatttaatg 52141542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 704
Target Start/End: Complemental strand, 5198969 - 5198838
Alignment:
Q  570 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagta 669  Q
    |||||||||||  |||||||||||||||| |||||||| |||| ||| | ||||||||||||||||            | ||||||||||| ||||| ||    
T  5198969 ttaacttgtgctcttagggcacatgttaaacattaatttcatttcataaatggtaagaatttaatg---aaaaaaaaataaatattaaacattttgaata 5198873  T
Q  670 acaaattcacacaatttccaatacataattactat 704  Q
    | ||||| |||||||||||||||||||||| ||||    
T  5198872 ataaattaacacaatttccaatacataatttctat 5198838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 562 - 634
Target Start/End: Original strand, 15881094 - 15881166
Alignment:
Q  562 gggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 634  Q
    ||||| ||||||||||| || | |||| |||| ||||||||||||| |||||||||| |||||||||||||||    
T  15881094 gggtcacgttaacttgtaccttaagggtacatattaagcattaatttcattccattaatggtaagaatttaat 15881166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 636
Target Start/End: Complemental strand, 943261 - 943194
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatgg 636  Q
    ||||||||||||| | |||| ||||||||| |||||||| |||||||||| | |||||||||||||||    
T  943261 gttaacttgtgccctcagggtacatgttaaacattaatttcattccattaatagtaagaatttaatgg 943194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 634
Target Start/End: Complemental strand, 12521472 - 12521397
Alignment:
Q  559 aatgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 634  Q
    ||||||||  ||||||||||||| | ||| |||||||||| |||||||| ||||| |||| |||||||||||||||    
T  12521472 aatgggtcgtgttaacttgtgccctaaggacacatgttaaacattaatttcattctattaatggtaagaatttaat 12521397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 599 - 636
Target Start/End: Original strand, 5466848 - 5466885
Alignment:
Q  599 gcattaattgcattccattagtggtaagaatttaatgg 636  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5466848 gcattaattgcattccattagtggtaagaatttaatgg 5466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 749
Target Start/End: Original strand, 47370427 - 47370496
Alignment:
Q  680 acaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 749  Q
    |||||||||||||||||||| |||| ||||  |||||||||||||||  ||| | ||||||||| |||||    
T  47370427 acaatttccaatacataatttctataagtggaattcttaatatatgtgataaggacacaagttagtattt 47370496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 48722691 - 48722740
Alignment:
Q  583 ttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    |||| ||||||||||| |||||||| |||||||||| |||||||||||||    
T  48722691 ttagagcacatgttaaacattaatttcattccattaatggtaagaattta 48722740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 605
Target Start/End: Complemental strand, 27211478 - 27211442
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaa 605  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27211478 gttaacttgtgcccttagggcacatgttaagcattaa 27211442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 632
Target Start/End: Original strand, 47370292 - 47370355
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    |||||||||||   ||| ||||||||||||||||||||  |||| ||||| |||||||||||||    
T  47370292 gttaacttgtgtaattatggcacatgttaagcattaatgtcatttcattaatggtaagaattta 47370355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 569 - 755
Target Start/End: Original strand, 30069701 - 30069883
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||||||||| |  ||||||||||||||           ||| |||||||||| ||||||    
T  30069701 gttaacttgtgctcttagggcacatgttaagcatttatttcattccattaataataagaatttaatggaaaaaag----ttagtattaaacaacttgagt 30069796  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 755  Q
    || ||||| ||||||||||||||||| ||||||||| ||||  |||||||| || ||   ||| |||||||||||| ||||||||||    
T  30069797 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccttaagggcacaagttaacatttcccttt 30069883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 750
Target Start/End: Complemental strand, 11258029 - 11257854
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||| | || ||||||||||||||||            ||||||||||||| ||| ||     
T  11258029 gttaacttgtgcccttagggcacatgttaaacattattttcattcaaataatggtaagaatttaatg------aaaaaattaatattaaacattttaagc 11257936  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttc 750  Q
    || ||||| |||||||||  ||||||||||| |||| ||||  |||||||| || ||  |||| |||||||||||| |||||    
T  11257935 aataaattaacacaatttataatacataatttctattagtggaattcttaacatgtgccctaagggcacaagttaacatttc 11257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 722
Target Start/End: Original strand, 26014845 - 26014993
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    |||||||||| || |||||||||||||||||||||||| ||||||||||| | ||||||||||| ||            |||| |||||||| ||||| |    
T  26014845 gttaacttgtacccttagggcacatgttaagcattaatagcattccattaatagtaagaatttattg-----aaaaaaattaacattaaacattttgaat 26014939  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatat 722  Q
    || ||||| |||||| ||||||||||||||| |||| | ||  |||||||||||    
T  26014940 aataaattaacacaaattccaatacataatttctattaatggtattcttaatat 26014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 558 - 634
Target Start/End: Original strand, 9402858 - 9402934
Alignment:
Q  558 taatgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 634  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||| || |||| || || |||||||||||||||    
T  9402858 taatgggtcatgttaacttctgcccttagggcacatgttaagcattattttcatttcaataatggtaagaatttaat 9402934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 560 - 632
Target Start/End: Complemental strand, 38869941 - 38869869
Alignment:
Q  560 atgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    |||||||  ||||||||||||| ||| |||||||||||| |||||||| |||||||||| ||||| |||||||    
T  38869941 atgggtcatgttaacttgtgcccttaaggcacatgttaaacattaatttcattccattaatggtatgaattta 38869869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 762
Target Start/End: Original strand, 37456102 - 37456202
Alignment:
Q  662 tttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttttctaat 761  Q
    ||||||||| ||||| |||||||||||||||||||||| |||| ||||  |||||||| |  ||  |||| |||||||||||  |||||| |||| ||||    
T  37456102 tttgagtaataaattaacacaatttccaatacataatttctattagtggaattcttaacacgtgccctaagggcacaagttagcatttccattttttaat 37456201  T
Q  762 t 762  Q
    |    
T  37456202 t 37456202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 648 - 743
Target Start/End: Original strand, 7107505 - 7107600
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagtta 743  Q
    |||||||| |||| |||||| || ||||| |||||||||||||||||||||| |||| ||||  |||||||| || ||   ||| |||||||||||    
T  7107505 ttaatattcaacattttgagcaataaatttacacaatttccaatacataatttctattagtggaattcttaacatgtgccataagggcacaagtta 7107600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 36660757 - 36660694
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||||| ||| |||| ||||||| |||||||| | |||||||| |||||||||||||    
T  36660757 gttaacttgtgcccttaaggcatatgttaaccattaatttcgttccattaatggtaagaattta 36660694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 5895998 - 5896060
Alignment:
Q  570 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||| || |||||||| |||||||||||||||| |||||| ||| | |||||||||||    
T  5895998 ttaacttgtacccttagggcatatgttaagcattaatttcattcctttaatagtaagaattta 5896060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 635
Target Start/End: Complemental strand, 36068479 - 36068413
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    ||||||||||||| | | | |||||||||||||||| || ||||||| || ||||||||||||||||    
T  36068479 gttaacttgtgccctcaagacacatgttaagcattattttcattccaataatggtaagaatttaatg 36068413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 635
Target Start/End: Original strand, 8072448 - 8072505
Alignment:
Q  578 tgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    |||| |||||||||||||||||||||| || ||||| | || ||||||||||||||||    
T  8072448 tgcccttagggcacatgttaagcattattttcattcaaataatggtaagaatttaatg 8072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 719
Target Start/End: Original strand, 1042780 - 1042851
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 719  Q
    ||||||||||||| ||| || || ||||| ||||||||| |||||||||||| |||| ||||| ||| ||||    
T  1042780 ttaatattaaacattttaagcaataaattaacacaattttcaatacataatttctattagtgaaatttttaa 1042851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 719
Target Start/End: Complemental strand, 16037381 - 16037310
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 719  Q
    ||||||||||||| |||||  || ||||| | ||||||||| |||||||||| |||||||||  ||||||||    
T  16037381 ttaatattaaacattttgaccaataaattaatacaatttccgatacataatttctatcagtggaattcttaa 16037310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 31411046 - 31410983
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    |||||||||| || |||||| |||||||||||||||||| |||| | ||| | |||||||||||    
T  31411046 gttaacttgtaccattagggtacatgttaagcattaatttcatttctttaatagtaagaattta 31410983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 613
Target Start/End: Complemental strand, 40651783 - 40651740
Alignment:
Q  570 ttaacttgtgccgttagggcacatgttaagcattaattgcattc 613  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||    
T  40651783 ttaacgtgtgcctttagggcacatgttaagcattaatttcattc 40651740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 607
Target Start/End: Complemental strand, 31451412 - 31451374
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaatt 607  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  31451412 gttaacttgtgctcttagggcacatgttaagcattaatt 31451374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 9e-26; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 569 - 751
Target Start/End: Original strand, 13863589 - 13863767
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||| ||||| | |||||||||||||||           ||| |||||||||| ||||||    
T  13863589 gttaacttgtgcccttaggacacatgttaagcattaatttcatttcattaatagtaagaatttaatgg---aaaaaaaattagtattaaacaacttgagt 13863685  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcc 751  Q
    || ||||| ||||||||||||||||| ||||||||| ||||  |||||||| || ||  || |||||||||||||| ||||||    
T  13863686 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccct-aaggcacaagttaacatttcc 13863767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 37238766 - 37238832
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  37238766 gttaacttgtgcccttagggcacatgttaagcattaatttcattccattaatggtaataatttaatg 37238832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 635
Target Start/End: Complemental strand, 972586 - 972520
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    ||||||||||||  ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  972586 gttaacttgtgcttttagggcacatgttaagcattaatttcatttcattaatggtaagaatttaatg 972520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 648 - 751
Target Start/End: Original strand, 36923581 - 36923684
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    ||||||||||||| |||||| || ||||| |||||||||||||||||||||| |||| ||||  ||||||||||| ||  ||||  |||||| |||| ||    
T  36923581 ttaatattaaacattttgagcaataaattaacacaatttccaatacataatttctattagtggaattcttaatatgtgccctaagagcacaaattaacat 36923680  T
Q  748 ttcc 751  Q
    ||||    
T  36923681 ttcc 36923684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 648 - 754
Target Start/End: Original strand, 7681616 - 7681722
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    |||||||||||| | |||| ||| ||||| ||||||||||||||||| ||||||||| |||   |||| ||| ||||| |||||  ||||||||||| ||    
T  7681616 ttaatattaaactacttgaataataaattaacacaatttccaatacacaattactattagtagaattcataacatatgctctaagagcacaagttaaaat 7681715  T
Q  748 ttccctt 754  Q
    |||||||    
T  7681716 ttccctt 7681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 28963362 - 28963428
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    |||||||||||   |||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  28963362 gttaacttgtgttcttagggcacatgtttagcattaatttcattccattaatggtaagaatttaatg 28963428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 725
Target Start/End: Original strand, 13433736 - 13433809
Alignment:
Q  652 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatg 725  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||| ||||| ||| ||||  ||||||||||||||    
T  13433736 tattaaacaatttgagtaataaattcacataattttcaatacaaaattattattagtggaattcttaatatatg 13433809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 635
Target Start/End: Complemental strand, 28946004 - 28945929
Alignment:
Q  560 atgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    |||||||  ||||||||||||| ||| |||| ||||||| |||||||| |||||||||| |||||| |||||||||    
T  28946004 atgggtcatgttaacttgtgcccttaaggcatatgttaaacattaatttcattccattaatggtaaaaatttaatg 28945929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 648 - 749
Target Start/End: Complemental strand, 21490471 - 21490370
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    ||||||||||||| |||||  || ||||| ||||||||||||||| ||||||  ||| ||||  |||||||| || || ||||| | |||||||||||||    
T  21490471 ttaatattaaacattttgaacaataaattaacacaatttccaatatataatttatattagtggaattcttaacatgtgctctaaggacacaagttaatat 21490372  T
Q  748 tt 749  Q
    ||    
T  21490371 tt 21490370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 632
Target Start/End: Complemental strand, 43310626 - 43310565
Alignment:
Q  571 taacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||| | ||||||||||||||||||||||  |||||||||| ||| |||||||||    
T  43310626 taacttgtgccctcagggcacatgttaagcattaatgtcattccattaatggaaagaattta 43310565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 699
Target Start/End: Original strand, 50524321 - 50524365
Alignment:
Q  655 taaacaatttgagtaacaaattcacacaatttccaatacataatt 699  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  50524321 taaacaatttgagtaataaattaacacaatttccaatacataatt 50524365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 662 - 753
Target Start/End: Complemental strand, 43310429 - 43310338
Alignment:
Q  662 tttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccct 753  Q
    |||||| || ||||| ||||||||||||||||| |||| |||| |||   |||||||| || || |||||||||||||||||  ||||||||    
T  43310429 tttgagcaataaattaacacaatttccaatacaaaatttctattagtagaattcttaacatgtgctctaaaggcacaagttagcatttccct 43310338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 631
Target Start/End: Original strand, 52915456 - 52915518
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattt 631  Q
    ||||||||||||  ||| | ||||||||||||||||||  |||| ||||||||||||||||||    
T  52915456 gttaacttgtgctcttatgacacatgttaagcattaatgtcatttcattagtggtaagaattt 52915518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 754
Target Start/End: Original strand, 28451800 - 28451897
Alignment:
Q  657 aacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 754  Q
    |||| ||||| ||| ||||| ||||||||||||||| ||||||  ||| ||||  |||||||| || ||  |||| |||||||||||| |||||||||    
T  28451800 aacattttgaataataaattaacacaatttccaatatataatttttattagtggaattcttaacatgtgccctaagggcacaagttaacatttccctt 28451897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 605
Target Start/End: Complemental strand, 38773685 - 38773649
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaa 605  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38773685 gttaacttgtgcccttagggcacatgttaagcattaa 38773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 605
Target Start/End: Original strand, 51980692 - 51980728
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaa 605  Q
    ||||||||||||| |||||||||||||||||||||||    
T  51980692 gttaacttgtgcccttagggcacatgttaagcattaa 51980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 35982433 - 35982370
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||||  ||| ||||||| ||||||||||||| ||||||| || || ||||||||||    
T  35982433 gttaacttgtgcatttacggcacatattaagcattaatttcattccactaatgttaagaattta 35982370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 52378748 - 52378685
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||||| |||||||||||||||| ||||||||  ||| | ||| |||| ||||||||    
T  52378748 gttaacttgtgcctttagggcacatgttaaacattaattttatttctttaatggtgagaattta 52378685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 4565705 - 4565659
Alignment:
Q  82 aatatacaacaaattgaatcgatgataaaa-tgcaatcaacatgatt 127  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  4565705 aatatacaacaaattgaatctatgataaaattgcaatcaagatgatt 4565659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 705
Target Start/End: Original strand, 8702079 - 8702129
Alignment:
Q  655 taaacaatttgagtaacaaattcacacaatttccaatacataattactatc 705  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||| |||||||    
T  8702079 taaataatttgagtaataaattaacacaattttcaatacataaatactatc 8702129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 705
Target Start/End: Original strand, 9053966 - 9054016
Alignment:
Q  655 taaacaatttgagtaacaaattcacacaatttccaatacataattactatc 705  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||| |||||||    
T  9053966 taaataatttgagtaataaattaacacaattttcaatacataaatactatc 9054016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 46749042 - 46748980
Alignment:
Q  570 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||||  ||| |||||||||||| ||||||  ||||| ||||| ||||||||||||    
T  46749042 ttaacttgtgcctatagagcacatgttaagtattaatatcattctattagcggtaagaattta 46748980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 569 - 751
Target Start/End: Complemental strand, 14776447 - 14776270
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||| | ||||| |||||||||| |||||||| |||| ||||| |||||||||||| |||            |||||||||||||||||||||    
T  14776447 gttaacttgtgtccttaggacacatgttaaacattaatttcatttcattaatggtaagaatttgatg-----aaaaaaattaatattaaacaatttgagt 14776353  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcc 751  Q
    || ||||| ||||||||| ||||||||||||||||  | | | |||||||| || || ||||| |||||||||||| ||||||    
T  14776352 aataaattaacacaattttcaatacataattactaatattaaaattcttaacatgtgctctaatggcacaagttaacatttcc 14776270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 648 - 756
Target Start/End: Complemental strand, 9374129 - 9374021
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    ||||||||||||| |||||| || ||||| | |||||||||||||||||||| || | | ||| ||| |||| || || |||||||||| ||||||||||    
T  9374129 ttaatattaaacattttgagcaataaattaaaacaatttccaatacataatttctgttaatgaaatttttaacatgtgctctaaaggcataagttaatat 9374030  T
Q  748 ttccctttt 756  Q
    ||| |||||    
T  9374029 ttctctttt 9374021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 719
Target Start/End: Complemental strand, 40534394 - 40534250
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||  |||||||||||||||| |||||||| ||| |||||| | |||||||||||||||           ||| |||||||||| ||||||    
T  40534394 gttaacttgtgctcttagggcacatgttaaacattaatttcataccattaatagtaagaatttaatgg------aaaaattagtattaaacaacttgagt 40534301  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaa 719  Q
    || ||||| ||||||||| ||||||| |||||| || ||||  ||||||||    
T  40534300 aataaattaacacaattttcaatacacaattacgattagtggaattcttaa 40534250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 10500483 - 10500420
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||    
T  10500483 gttaacttgtgccgttaaggcacatgttaagcattaatgtaattccattaatggtaagaattta 10500420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 753
Target Start/End: Complemental strand, 32227612 - 32227431
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||| ||||||  ||||||||||||||||||||||||| |||||||||| |||||| |||||||||            ||||||||||||| ||| |      
T  32227612 gttaatttgtgcttttagggcacatgttaagcattaatttcattccattaatggtaataatttaatg---aaaaaaaaattaatattaaacattttaaac 32227516  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccct 753  Q
    || ||||  ||||||||| |||||||||||| |||| |||   |||||||| |||||  |||| |||||| ||||| ||||||||    
T  32227515 aataaatgaacacaattttcaatacataatttctattagtagaattcttaacatatgccctaagggcacatgttaacatttccct 32227431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 724
Target Start/End: Original strand, 30326106 - 30326182
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatat 724  Q
    ||||||||||||| ||||||||| ||||| ||||||||| |||||||||||| || | | ||| |||||||| ||||    
T  30326106 ttaatattaaacattttgagtaataaattaacacaattttcaatacataatttctcttaatgaaattcttaacatat 30326182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 569 - 754
Target Start/End: Original strand, 35327751 - 35327931
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    |||||| |||||| | |||| ||||||||| |||||||| |||| ||||| |  ||||||||||||||           ||| |||||||||| ||||||    
T  35327751 gttaacatgtgccctcagggtacatgttaaacattaatttcatttcattaatattaagaatttaatggaaaaaaa----ttagtattaaacaacttgagt 35327846  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 754  Q
    || ||||| ||||| ||| ||||||| ||||||||| ||||  |||||||  || |||  ||| |||||||||||| |||||||||    
T  35327847 aataaattaacacagttttcaatacacaattactattagtggaattcttac-atgtgtcttaagggcacaagttaacatttccctt 35327931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 626
Target Start/End: Original strand, 27414051 - 27414108
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaag 626  Q
    ||||||||||||| ||||||||||||||||||||||| | | | |||||| |||||||    
T  27414051 gttaacttgtgcccttagggcacatgttaagcattaaattcttgccattaatggtaag 27414108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 749
Target Start/End: Original strand, 33830302 - 33830395
Alignment:
Q  656 aaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 749  Q
    ||||| |||||| || ||||| |||||||||||||||||||||| |||| ||| | |||||||| ||||  | ||| |||| ||||||| ||||    
T  33830302 aaacattttgagcaataaattaacacaatttccaatacataatttctattagtaaaattcttaacatatactataagggcataagttaacattt 33830395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 634
Target Start/End: Complemental strand, 43305653 - 43305604
Alignment:
Q  585 agggcacatgttaagcattaattgcattccattagtggtaagaatttaat 634  Q
    |||||| |||||||||||||||| |||||||||| |||||| ||||||||    
T  43305653 agggcatatgttaagcattaatttcattccattaatggtaataatttaat 43305604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 605
Target Start/End: Original strand, 44721342 - 44721387
Alignment:
Q  560 atgggtcccgttaacttgtgccgttagggcacatgttaagcattaa 605  Q
    |||||||  ||||||||||||| |||| ||||||||||||||||||    
T  44721342 atgggtcatgttaacttgtgcccttagagcacatgttaagcattaa 44721387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 569 - 754
Target Start/End: Original strand, 38073572 - 38073752
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||            |||||| |||| | ||||||     
T  38073572 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatg-----aaataaattaatactaaatattttgagc 38073666  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 754  Q
    || ||||| |||||||||| ||||||||||| |||| || || || ||||| || ||  |||| |||||||||||| |||||||||    
T  38073667 aataaattaacacaatttctaatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacatttccctt 38073752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 719
Target Start/End: Original strand, 20884456 - 20884604
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||           ||| |||||||||||||||||    
T  20884456 gttaacttgtgcccttagggtacatgttaagcattaatttcatttcattaatagtaagaatttaatgg---gaaaaaaattagtattaaacaatttgagt 20884552  T
Q  669 -aacaaattcacacaatttccaatacataattactatcagtgagattcttaa 719  Q
     || ||||| ||||||||||||||| | ||||||||| ||||  ||||||||    
T  20884553 aaataaattaacacaatttccaatatacaattactattagtggaattcttaa 20884604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 569 - 634
Target Start/End: Original strand, 39854086 - 39854151
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 634  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||| ||||||||    
T  39854086 gttaacttgtgcccttagggcatatgttaagcattaatttcattccattaatggtaaaaatttaat 39854151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 632
Target Start/End: Original strand, 38652637 - 38652700
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||||| |||||| ||||||||| |||||||  ||||||||||||||||||||||||    
T  38652637 gttaacttgtgcccttagggtacatgttaaacattaatgtcattccattagtggtaagaattta 38652700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 632
Target Start/End: Original strand, 45513091 - 45513154
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||||| ||| | ||||||||||||| ||||| |||||||||| |||||||||||||    
T  45513091 gttaacttgtgcccttaagacacatgttaagcactaatttcattccattaatggtaagaattta 45513154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 632
Target Start/End: Original strand, 8073536 - 8073597
Alignment:
Q  571 taacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    ||||||||||| || |||||||||||||||||||||  ||||||| || |||||||||||||    
T  8073536 taacttgtgcctttggggcacatgttaagcattaatgtcattccactaatggtaagaattta 8073597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 650 - 699
Target Start/End: Complemental strand, 11667095 - 11667046
Alignment:
Q  650 aatattaaacaatttgagtaacaaattcacacaatttccaatacataatt 699  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  11667095 aatattaaacaatttgagcaataaattaacacaatttccaatacataatt 11667046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 750
Target Start/End: Complemental strand, 21148491 - 21148389
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    ||||||||||||| ||||||||| ||||| | ||||||| ||||||||||||  ||| ||||  |||||||| || |||  |||| |||||| |||| ||    
T  21148491 ttaatattaaacattttgagtaataaattaatacaattttcaatacataatttttattagtggaattcttaacatgtgtcttaaaagcacaacttaacat 21148392  T
Q  748 ttc 750  Q
    |||    
T  21148391 ttc 21148389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 606
Target Start/End: Complemental strand, 11667157 - 11667120
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaat 606  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11667157 gttaacttgtgcccttagggcacatgttaagcattaat 11667120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 603
Target Start/End: Complemental strand, 38073743 - 38073709
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcatt 603  Q
    ||||||||||||| |||||||||||||||||||||    
T  38073743 gttaacttgtgcccttagggcacatgttaagcatt 38073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 749
Target Start/End: Original strand, 38652729 - 38652806
Alignment:
Q  672 aaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 749  Q
    ||||| ||||| |||||||||||||||| |||| ||||  |||||||| || ||  ||||| ||||||||||| ||||    
T  38652729 aaattaacacactttccaatacataatttctattagtggaattcttaacatgtgccctaaaagcacaagttaacattt 38652806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 569 - 754
Target Start/End: Original strand, 22409329 - 22409509
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| |||  ||||||||||| |||||||| |||||||||| ||||||||||||||||            ||||||||||||| ||| ||     
T  22409329 gttaacttgtgcccttaatgcacatgttaaacattaatttcattccattaatggtaagaatttaatg-----aaaaaaattaatattaaacattttaagc 22409423  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 754  Q
    || ||||| |||||||||||||||||| ||| |||| |||   |||||||| || ||  |||| |||||||||||| |||||||||    
T  22409424 aataaattaacacaatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacatttccctt 22409509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 568 - 755
Target Start/End: Complemental strand, 32318691 - 32318510
Alignment:
Q  568 cgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgag 667  Q
    |||||||||||||| ||||||||||||||||||||||||  |||| |||||||| ||| |||||| ||            ||||||||||||| |||||     
T  32318691 cgttaacttgtgcccttagggcacatgttaagcattaatgtcatttcattagtgttaataatttattg-----aaaaaaattaatattaaacattttgaa 32318597  T
Q  668 taacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 755  Q
     || ||||| ||||||||| |||||||||||| |||| | ||| |||||||| || ||  |||| |||||||||||| ||||||||||    
T  32318596 caataaattaacacaattttcaatacataatttctattaatgaaattcttaacatgtg-gctaagggcacaagttaacatttcccttt 32318510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 700
Target Start/End: Original strand, 20574856 - 20574985
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||  | |||||||||||||||           ||| |||||||||| ||||||    
T  20574856 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattgatagtaagaatttaatgg--aaaaaaaaattagtattaaacaacttgagt 20574953  T
Q  669 aacaaattcacacaatttccaatacataatta 700  Q
    || ||||| ||||||||||||||||| |||||    
T  20574954 aataaattaacacaatttccaatacacaatta 20574985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 569 - 755
Target Start/End: Original strand, 30537925 - 30538107
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    |||||||||| || |||||||||||||||| ||||| || ||||||| || |||||||||||||||||           | ||||||||||| ||||||     
T  30537925 gttaacttgttcccttagggcacatgttaaacattagtttcattccaataatggtaagaatttaatgg----aaaaaaatgaatattaaacattttgagc 30538020  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 755  Q
    || ||||| ||||||||| |||||||||||| |||| | ||  |||||||| || | |||||| || |||| |||| ||||||||||    
T  30538021 aataaattaacacaattttcaatacataatttctattaatggaattcttaacatgtattctaagggtacaaattaacatttcccttt 30538107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 569 - 636
Target Start/End: Complemental strand, 38794171 - 38794104
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatgg 636  Q
    ||||||||||||| ||||||| ||||||||||||||||| |||||||||| | |||||||||||||||    
T  38794171 gttaacttgtgcccttagggcccatgttaagcattaatttcattccattaatagtaagaatttaatgg 38794104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 648 - 753
Target Start/End: Complemental strand, 10109320 - 10109215
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    ||||||||||||| |||||| || ||||| ||||||||| |||||||||||| |||| ||||  ||||||||||| ||  |||| | |||||||||| ||    
T  10109320 ttaatattaaacattttgagcaataaattaacacaattttcaatacataatttctattagtggaattcttaatatgtgccctaaggacacaagttaacat 10109221  T
Q  748 ttccct 753  Q
    ||||||    
T  10109220 ttccct 10109215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 652 - 719
Target Start/End: Original strand, 14958401 - 14958468
Alignment:
Q  652 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 719  Q
    |||||||||| |||||||| ||||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  14958401 tattaaacaagttgagtaataaattcacacaattttcaatacatgattactattagtgaaattcttaa 14958468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 569 - 634
Target Start/End: Original strand, 53039379 - 53039444
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 634  Q
    ||||||||||| | |||||||| |||||||||||||||| |||| ||||| |||||| ||||||||    
T  53039379 gttaacttgtgtccttagggcatatgttaagcattaatttcatttcattaatggtaaaaatttaat 53039444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 570 - 625
Target Start/End: Original strand, 4960354 - 4960409
Alignment:
Q  570 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaa 625  Q
    ||||||| |||| ||||| ||||||||||||||||||| |||||||||| ||||||    
T  4960354 ttaacttatgcccttaggacacatgttaagcattaatttcattccattaatggtaa 4960409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 750
Target Start/End: Complemental strand, 38793819 - 38793721
Alignment:
Q  652 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttc 750  Q
    |||||||||| || || || ||||| ||||||||| ||||||| ||||||||| ||||  |||||||| ||  || |||| |||||||||||| |||||    
T  38793819 tattaaacaacttaagcaataaattaacacaatttacaatacacaattactattagtggaattcttaacatgagtcctaagggcacaagttaacatttc 38793721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 709
Target Start/End: Original strand, 4960430 - 4960489
Alignment:
Q  650 aatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtg 709  Q
    |||||||||||||||||| || ||||| ||||||||| |||||| ||||| |||| ||||    
T  4960430 aatattaaacaatttgagcaataaattaacacaattttcaatacgtaatttctattagtg 4960489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 30255186 - 30255255
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattcc---attagtggtaagaatttaatg 635  Q
    ||||||||||||| ||||||||||| |||| |||||||| ||||||   | || ||||||||||||||||    
T  30255186 gttaacttgtgcccttagggcacattttaaacattaatttcattccaataataatggtaagaatttaatg 30255255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 603
Target Start/End: Original strand, 17268776 - 17268810
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcatt 603  Q
    ||||||||||||| |||||||||||||||||||||    
T  17268776 gttaacttgtgcctttagggcacatgttaagcatt 17268810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 14136576 - 14136625
Alignment:
Q  583 ttagggcacatgttaagcattaattgcattccattagtggtaagaattta 632  Q
    |||||||||||||||| |||||||   ||||||||| |||||||||||||    
T  14136576 ttagggcacatgttaaacattaatattattccattattggtaagaattta 14136625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 648 - 755
Target Start/End: Original strand, 36406 - 36513
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    ||||||||||| | |||||| || ||||| |||||||||||||||||||||| |||| ||||  |||||||| || || | ||| |||||||||||| ||    
T  36406 ttaatattaaatattttgagaaataaattaacacaatttccaatacataatttctattagtggaattcttaacatgtgctttaagggcacaagttaacat 36505  T
Q  748 ttcccttt 755  Q
    ||||||||    
T  36506 ttcccttt 36513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 648 - 749
Target Start/End: Complemental strand, 21334 - 21233
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 747  Q
    ||||||||||||| ||||| ||| ||||| ||||||||||||||| ||||||  ||| | ||  |||||||| || ||| ||||||||||||||||| ||    
T  21334 ttaatattaaacattttgaataataaattaacacaatttccaatatataatttttattattggaattcttaacatgtgtcctaaaggcacaagttaacat 21235  T
Q  748 tt 749  Q
    ||    
T  21234 tt 21233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 630
Target Start/End: Original strand, 33972591 - 33972652
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatt 630  Q
    ||||||||||||  |||| |||||||||||||||||||| |||||||||| |||||||||||    
T  33972591 gttaacttgtgctcttagagcacatgttaagcattaatttcattccattaatggtaagaatt 33972652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 3213646 - 3213695
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccatta 618  Q
    ||||||| ||| | |||||||||||||||| |||||||| ||||||||||    
T  3213646 gttaactcgtgtctttagggcacatgttaaacattaatttcattccatta 3213695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 634
Target Start/End: Original strand, 12141692 - 12141757
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 634  Q
    ||||||||||||  ||| | |||||||||| |||||||| |||||||||| || ||| ||||||||    
T  12141692 gttaacttgtgcatttaagacacatgttaaacattaatttcattccattaatgataaaaatttaat 12141757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 569 - 754
Target Start/End: Original strand, 260294 - 260474
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 668  Q
    ||||||||||||| ||||||  ||||||||||||||||  |||||||||| ||||||||||||| ||            |||| |||||||| |||||      
T  260294 gttaacttgtgcccttagggtccatgttaagcattaatgtcattccattaatggtaagaatttattg-----aaaaaaattaacattaaacattttgaac 260388  T
Q  669 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 754  Q
    || ||||| |||||| || |||||||||||| |||| ||||  ||||||||||| ||  || | |||||||||||  |||||||||    
T  260389 aataaattaacacaaatttcaatacataatttctattagtggtattcttaatatgtgcccttagggcacaagttatcatttccctt 260474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 652 - 719
Target Start/End: Complemental strand, 25837009 - 25836942
Alignment:
Q  652 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 719  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||||| ||| ||||  ||||||||    
T  25837009 tattaaacaatttgagtaataaatgaacacactttccaatacataattattattagtggaattcttaa 25836942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 569 - 636
Target Start/End: Complemental strand, 25837496 - 25837429
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatgg 636  Q
    |||||||| |||| ||| | ||||||||||||||||||| ||||  |||| |||||||||||||||||    
T  25837496 gttaacttatgcccttaagacacatgttaagcattaatttcattatattaatggtaagaatttaatgg 25837429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 635
Target Start/End: Complemental strand, 21369269 - 21369224
Alignment:
Q  590 acatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||    
T  21369269 acatgttaaacattaatttcattccattaatggtaagaatttaatg 21369224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 719
Target Start/End: Original strand, 10044224 - 10044295
Alignment:
Q  648 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 719  Q
    ||||||||||||| |||||| || ||||| |||||| || |||||||||||| |||| | ||| ||||||||    
T  10044224 ttaatattaaacattttgagcaataaattaacacaactttcaatacataatttctattaatgacattcttaa 10044295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 605
Target Start/End: Complemental strand, 28085353 - 28085307
Alignment:
Q  559 aatgggtcccgttaacttgtgccgttagggcacatgttaagcattaa 605  Q
    ||||||||  ||||||||||||  |||||||||||||||||||||||    
T  28085353 aatgggtcatgttaacttgtgctcttagggcacatgttaagcattaa 28085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 704
Target Start/End: Original strand, 5402771 - 5402824
Alignment:
Q  652 tattaaacaatttga-gtaacaaattcacacaatttccaatacataattactat 704  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||| |||||||||    
T  5402771 tattaaacaacttgaagtaataaattaacacaatttccaatacacaattactat 5402824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 9076 - 9142
Alignment:
Q  569 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 635  Q
    |||||||||| || ||||| |||||||||||||||||||  |||||| || ||| || |||||||||    
T  9076 gttaacttgttcccttaggacacatgttaagcattaattttattccactaatggcaataatttaatg 9142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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