View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_high_11 (Length: 523)
Name: NF1121_high_11
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 67 - 517
Target Start/End: Original strand, 8456942 - 8457392
Alignment:
| Q |
67 |
gtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttctcgcctgaaggtaaa |
166 |
Q |
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| T |
8456942 |
gtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttctcgcctgaaggttaa |
8457041 |
T |
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| Q |
167 |
atcaactgcctttgaagtattaggcatacgattctagggtcttaaagtgcaataatttattgtctttcctctgttttgcaggttacactcctcagaacct |
266 |
Q |
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| T |
8457042 |
atcaactgcctttgaagtattaggcatacgattctagggtcttgaagtgcaataatttattgtctttcctctgttttgcaggttacactcctcagaacct |
8457141 |
T |
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| Q |
267 |
ttactctcttaatagtaaatatggttctgagcatcaattaaaagctttacttcaaaagttgaagcaacagaaagtcagagcaatggctgatatagttatc |
366 |
Q |
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| T |
8457142 |
ttactctcttaatagtaaatatggttctgagcatcaattaaaagctttacttcaaaagttgaagcaacagaaagtcagagcaatggctgatatagttatc |
8457241 |
T |
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| Q |
367 |
aatcatcgtgttggtaccacccaaggacatggagggatgtataatcgttttgatggaattccattaccgtgggatgaacgtgctgtaacatcatctactg |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457242 |
aatcatcgtgttggtaccacccaaggacatggagggatgtataatcgttttgatggaattccattaccgtgggatgaacgtgctgtaacatcatctactg |
8457341 |
T |
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| Q |
467 |
gtggactggtaacatatatgatacattcaaatatattttcatattcttcga |
517 |
Q |
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| T |
8457342 |
gtggactggtaacatatatgatacatccaaatatattttcattttattcga |
8457392 |
T |
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