View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_high_18 (Length: 415)
Name: NF1121_high_18
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 20433167 - 20432863
Alignment:
| Q |
1 |
ctcctgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgca |
100 |
Q |
| |
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||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||| |
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| T |
20433167 |
ctcctgaatactttcttcatttggtcatacatttgtttaatgaaaatctaagtggctcactgatattgttttgtcttagtcagagatataataagttgca |
20433068 |
T |
|
| Q |
101 |
ttgatggattatattctaagctctgacagatctagagattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttca |
200 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
20433067 |
ttgatgggttatattctaagatctgacagatgtagagattaaatttctaagactgttatttggtatcaactttgttttcttaaacttggtctaaatttca |
20432968 |
T |
|
| Q |
201 |
tcttctattaaattaacaggaacttatattcattgtctttgttttgactcaaaggaggaactttatgcttg--ttgattgttttttaatgtatatcagat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
20432967 |
tcttctattaaattaacaggaacttatattcattgtctttgttttgactcaaagcaggaactttctgcttgttttgattgttttttaatgtatatcagat |
20432868 |
T |
|
| Q |
299 |
taaat |
303 |
Q |
| |
|
||||| |
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|
| T |
20432867 |
taaat |
20432863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 136 - 402
Target Start/End: Complemental strand, 20432710 - 20432446
Alignment:
| Q |
136 |
agattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttctattaaattaacaggaacttatattcattg |
235 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20432710 |
agattaaatttcgaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttctattaaattaacaggaacttatattcattg |
20432611 |
T |
|
| Q |
236 |
tctttgttttgactcaaaggaggaactttatgcttgttgattgttttttaatgtatatcagattaaataaacatttgatcaagtgtttcctacctagaat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
20432610 |
tctttgttttgactcaaaggaggaactttctgcttgttgattgttttttaatgtatatcagattaaataaacatttgatcaagtgcttcctaccaagaat |
20432511 |
T |
|
| Q |
336 |
aacttcaattaaagnnnnnnnnnatcaagataacgaatctggacagtttttagtttccccgcttttc |
402 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
20432510 |
aacttcaattaaag--tttttttatcaagataacgaatctggaaagtttttagtttccccacttttc |
20432446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 20439640 - 20439387
Alignment:
| Q |
1 |
ctcctgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgca |
100 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||| |
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|
| T |
20439640 |
ctcctgaatactttcttcatttggtcatacatttgtttaatgaaaatctaagtggctcactgatattgttttgtcttagtcagagatataataagttgca |
20439541 |
T |
|
| Q |
101 |
ttgatggattatattctaagctctgacagatctagagattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttca |
200 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
20439540 |
ttgatgggttatattctaagatctgacagatgtagagattaaatttctaagactgttatttggtatcaactttgttttcttaaacttggtctaaatttca |
20439441 |
T |
|
| Q |
201 |
tcttctattaaattaacaggaacttatattcattgtctttgttttgactcaaag |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20439440 |
tcttctattaaattaacaggaacttatattcattgtctttgttttgactcaaag |
20439387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 136 - 303
Target Start/End: Complemental strand, 20432871 - 20432702
Alignment:
| Q |
136 |
agattaaatttctaagactgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttctattaaattaacaggaacttatattcattg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20432871 |
agattaaatttctaagactgttatttggtatcaattttgttttcttaaacttggtctaaatttcatcttctattaaattaacaggaacttatattcattg |
20432772 |
T |
|
| Q |
236 |
tctttgttttgactcaaaggaggaactttatgcttg--ttgattgttttttaatgtatatcagattaaat |
303 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
20432771 |
tctttgttttgactcaaagcaggaactttctgcttgttttgattgttttttaatgtatatcagattaaat |
20432702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 20445367 - 20445216
Alignment:
| Q |
1 |
ctcctgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
20445367 |
ctcctgaatccttgcttcatttggtcatacatctgtttaatgaaaatctaagtagctcactgatttgtttttctcttactcagagatataataagttgca |
20445268 |
T |
|
| Q |
101 |
ttgatggattatattctaagctctgacagatctagagattaaatttctaaga |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20445267 |
ttgatggattatattctaagctctgacagatctagagattaaatttctaaga |
20445216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 202 - 388
Target Start/End: Original strand, 20423726 - 20423908
Alignment:
| Q |
202 |
cttctattaaattaacaggaacttatattcattgtctttgttttgactcaaaggaggaactttatgcttgttgattgttttttaatgtatatcagattaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
20423726 |
cttctattaaattaacaggaacttatattcattgtctttgttttcactcaaagcaggaactttctgcttgttgattgttttttaatgcatatcagattaa |
20423825 |
T |
|
| Q |
302 |
ataaacatttgatcaagtgtttcctacctagaataacttcaattaaagnnnnnnnnnatcaagataacgaatctggacagtttttag |
388 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
20423826 |
cataacatttgatcaagttcttcctacctagaataacttcaattaaag----tttttataaagataacgaatctggacagtttttag |
20423908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 20410251 - 20410101
Alignment:
| Q |
5 |
tgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgcattga |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20410251 |
tgaatacttgcttcatttggtcatacatctctgtaaagaaaatctaagtagctcactggttttcttttctcttactcagagatataataagttgcattga |
20410152 |
T |
|
| Q |
105 |
tggattatattctaagctctgacagatctagagattaaatttctaagactg |
155 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20410151 |
tgtgttatattctaagctctgacagatctagagattaaatttctaggactg |
20410101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 20426948 - 20426801
Alignment:
| Q |
5 |
tgaatccttgcttcatttggtcatacatccgtttaatgaaaatctaagtagctcactgattttgttttctcttactcagagatataataagttgcattga |
104 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | |
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|
| T |
20426948 |
tgaatacttgcttcatttggtcaaacatttgtttaatgaaaatctaagtagctcactgatttt-ttttctcttaatcagcgatataataagttgcat--a |
20426852 |
T |
|
| Q |
105 |
tggattatattctaagctctgacagatctagagattaaatttctaagactg |
155 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20426851 |
tgggttatattctaagctctaacagatctagagattaaatttctaagactg |
20426801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 20408602 - 20408667
Alignment:
| Q |
90 |
aataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
155 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20408602 |
aataagttgcattgatgggttatattctaagctctgacagatctagagattaaatttctaagactg |
20408667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 20424129 - 20424194
Alignment:
| Q |
90 |
aataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
155 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20424129 |
aataagttgcattgatgggttatattctaagctctgacagatctagagattaaatttctatgactg |
20424194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 20443219 - 20443284
Alignment:
| Q |
90 |
aataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
155 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20443219 |
aataagttgctttgatgggttatattctaagctctgacagatctagagattaaatttctaagactg |
20443284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 399
Target Start/End: Original strand, 20442908 - 20443017
Alignment:
| Q |
286 |
atgtatatcagattaaataaacatttgatcaagtgtttcctacctagaataacttcaattaaagnnnnnnnnnatcaagataacgaatctggacagtttt |
385 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||| |
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|
| T |
20442908 |
atgtatatcagattatattaacatttgatcaagttcttcctacctagaataacttaagttaaag----tttttatcaagataacgaatttggacagtttt |
20443003 |
T |
|
| Q |
386 |
tagtttccccgctt |
399 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
20443004 |
tagtttccctgctt |
20443017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 20373015 - 20373111
Alignment:
| Q |
59 |
actgattttgttttctcttactcagagatataataagttgcattgatggattatattctaagctctgacagatctagagattaaatttctaagactg |
155 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| || |||||| || |||| || ||| ||||||||||||||||| | |||||||||| |
|
|
| T |
20373015 |
actgattttgttttctcttactcagagttattataagtggctttgatgagttgccttctcagttctcacagatctagagattaattgtctaagactg |
20373111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 20408284 - 20408337
Alignment:
| Q |
154 |
tgttatttggtatcaattttgttttcttaaacttgttctaaatttcatcttcta |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
20408284 |
tgttatttggtatcaattaggttttcttaaatttgttcttaatttcgtcttcta |
20408337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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