View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_high_20 (Length: 391)
Name: NF1121_high_20
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 78 - 378
Target Start/End: Original strand, 33858576 - 33858876
Alignment:
| Q |
78 |
ttctgatcttgttatttggcatcttcaannnnnnncttgctaaatttgcaatgccaacagtgttttatttcttctttgctttcgacttggctttaatatt |
177 |
Q |
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| T |
33858576 |
ttctgatcttgttatttggtatcttcaatttttttcttgctaaatttgcaatgccaacagtgttttatttcttctttgctttagacttggctttaatatt |
33858675 |
T |
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| Q |
178 |
taattttatgctaataagcattcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgt |
277 |
Q |
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| T |
33858676 |
taattttatgctaataagcattcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgt |
33858775 |
T |
|
| Q |
278 |
atccgcgtcttgctcatggaaaatcttggaatgaagtaagtttatctagtccatttcattacacaccactagcctaacatttcctaatcatacattggtt |
377 |
Q |
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| T |
33858776 |
atccgcgtcttgcgcatggaaaatcttggaatgaagtaagtttatctagtccatttcattacacaccactagcctaacatttcctaatcatacattggtt |
33858875 |
T |
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| Q |
378 |
c |
378 |
Q |
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| T |
33858876 |
c |
33858876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 198 - 378
Target Start/End: Original strand, 33873556 - 33873736
Alignment:
| Q |
198 |
ttcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatgga |
297 |
Q |
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| T |
33873556 |
ttcatttgattgagcattgcagcctaagcttgttgcagtttcaaacttcatcgcatttgcaaatcctaaagcacctgtatatccacgccttgctcatgga |
33873655 |
T |
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| Q |
298 |
aaatcttggaatgaagtaagtttatctagtccatttcattacacaccactagcctaacatttcctaatcatacattggttc |
378 |
Q |
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| T |
33873656 |
aagtcttggaatgaagtaagtttatctagtctatttaattacacaatactaacctaacatttcctaattatacattggttc |
33873736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 179 - 321
Target Start/End: Original strand, 33868987 - 33869129
Alignment:
| Q |
179 |
aattttatgctaataagcattcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgta |
278 |
Q |
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| T |
33868987 |
aattttatgctaacaagtgttcatttgattgagcattgcagcctaagcttgtggcagtttcgaacttcatcgcatttgcaaatcctaaagcacctgtgta |
33869086 |
T |
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| Q |
279 |
tccgcgtcttgctcatggaaaatcttggaatgaagtaagttta |
321 |
Q |
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| T |
33869087 |
tccacgccttgctaatggaaagtcttggaatgaagtatgttta |
33869129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 42781784 - 42781889
Alignment:
| Q |
215 |
tgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatggaaaatcttggaatgaagt |
314 |
Q |
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||||||||| ||||||| | |||| || ||||| ||||||| ||||||||||| ||| | ||||| || |||||||| || ||||||||| ||||||| |
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| T |
42781784 |
tgcagcctaaacttgtggcggtttccaatttcatatcatttgccaatcctaaagcgcctttatatcctcgccttgctcaagggaaatcttgggatgaagt |
42781883 |
T |
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| Q |
315 |
aagttt |
320 |
Q |
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|||||| |
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| T |
42781884 |
aagttt |
42781889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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