View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1121_high_21 (Length: 386)

Name: NF1121_high_21
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1121_high_21
NF1121_high_21
[»] chr8 (13 HSPs)
chr8 (190-291)||(38254880-38254981)
chr8 (106-187)||(38255010-38255094)
chr8 (15-102)||(4656074-4656161)
chr8 (15-102)||(7149032-7149119)
chr8 (15-102)||(9458505-9458592)
chr8 (15-102)||(40264276-40264363)
chr8 (15-97)||(10795381-10795463)
chr8 (15-96)||(43604382-43604463)
chr8 (15-102)||(41385871-41385958)
chr8 (15-97)||(42275942-42276024)
chr8 (15-97)||(1605806-1605888)
chr8 (15-83)||(39371185-39371253)
chr8 (15-52)||(43489918-43489955)
[»] chr7 (9 HSPs)
chr7 (15-102)||(12252387-12252474)
chr7 (15-102)||(47912525-47912612)
chr7 (15-102)||(152859-152946)
chr7 (15-102)||(30111791-30111878)
chr7 (15-102)||(33475535-33475622)
chr7 (15-102)||(43056689-43056776)
chr7 (15-90)||(35089110-35089185)
chr7 (15-97)||(27417654-27417736)
chr7 (66-102)||(46197106-46197142)
[»] scaffold0237 (1 HSPs)
scaffold0237 (15-102)||(20448-20535)
[»] chr6 (3 HSPs)
chr6 (15-102)||(3109351-3109438)
chr6 (15-102)||(29864753-29864840)
chr6 (15-102)||(6475744-6475831)
[»] chr5 (8 HSPs)
chr5 (15-102)||(11632687-11632774)
chr5 (15-97)||(10553734-10553816)
chr5 (15-97)||(13949807-13949889)
chr5 (15-102)||(10553440-10553527)
chr5 (15-102)||(40411415-40411503)
chr5 (15-97)||(3603466-3603548)
chr5 (30-95)||(18676939-18677004)
chr5 (66-102)||(6827953-6827989)
[»] chr4 (8 HSPs)
chr4 (15-102)||(42315880-42315967)
chr4 (15-96)||(8583008-8583089)
chr4 (15-102)||(7808996-7809083)
chr4 (15-102)||(7820947-7821034)
chr4 (15-102)||(42217449-42217535)
chr4 (15-97)||(3434833-3434915)
chr4 (15-102)||(56399038-56399124)
chr4 (31-102)||(44930623-44930694)
[»] chr3 (18 HSPs)
chr3 (15-102)||(30589843-30589930)
chr3 (15-102)||(36054011-36054098)
chr3 (23-97)||(35731861-35731935)
chr3 (15-97)||(46223312-46223394)
chr3 (29-102)||(26292565-26292638)
chr3 (15-102)||(2124706-2124793)
chr3 (15-102)||(23360575-23360662)
chr3 (15-102)||(23367415-23367502)
chr3 (15-102)||(26556865-26556952)
chr3 (15-102)||(23697969-23698057)
chr3 (15-102)||(23716424-23716512)
chr3 (15-102)||(23734880-23734968)
chr3 (15-102)||(24149838-24149925)
chr3 (15-102)||(38628821-38628908)
chr3 (60-102)||(26004849-26004891)
chr3 (62-103)||(19551152-19551193)
chr3 (15-79)||(50899470-50899534)
chr3 (15-102)||(23754543-23754632)
[»] chr2 (5 HSPs)
chr2 (15-102)||(29941887-29941974)
chr2 (15-102)||(45547913-45548000)
chr2 (15-102)||(7486958-7487045)
chr2 (15-96)||(6288563-6288644)
chr2 (35-95)||(35171389-35171449)
[»] chr1 (5 HSPs)
chr1 (15-102)||(14389420-14389507)
chr1 (15-102)||(45319473-45319560)
chr1 (15-102)||(52706386-52706473)
chr1 (15-97)||(45535755-45535837)
chr1 (15-97)||(26881822-26881904)
[»] scaffold0153 (1 HSPs)
scaffold0153 (15-102)||(33826-33913)
[»] scaffold0016 (1 HSPs)
scaffold0016 (15-102)||(80794-80881)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 38254981 - 38254880
Alignment:
Q  190 tctttcataattcattcaattcttgatccctattgccagcaatgtcttctatctctttctccactccttcttcttcttattacccatttcctaagattca 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38254981 tctttcataattcattcaattcttgatccctattgccagcaatgtcttctatctctttctccactccttcttcttcttattacccatttcctaagattca 38254882  T
Q  290 tt 291  Q
    ||    
T  38254881 tt 38254880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 38255094 - 38255010
Alignment:
Q  106 ttaagtctaaaatatatcttcctaccatttctcaaaaacatatcctctcaa---gagtgaaaacaacacaagagtaacacagtat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||| |||||||||||||    
T  38255094 ttaagtctaaaatatatcttcctaccatttctcaaaaacatatcctctcaattggagagaaaacaacacaacagtaacacagtat 38255010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 4656074 - 4656161
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  4656074 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 4656161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 7149032 - 7149119
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  7149032 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 7149119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 9458505 - 9458592
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  9458505 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 9458592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 40264363 - 40264276
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  40264363 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 40264276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 10795463 - 10795381
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||    
T  10795463 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaata 10795381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 43604463 - 43604382
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaat 96  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||    
T  43604463 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaat 43604382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 41385958 - 41385871
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    ||||| |||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  41385958 aaaattaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaaatctcaatccaatacaccc 41385871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 42275942 - 42276024
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||| ||||    
T  42275942 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatctaata 42276024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 1605888 - 1605806
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||  ||||||||||||||||||||       |||||||||||||| | |||||||||||||||||||||    
T  1605888 aaaatcaatacaatcctgcaaagtcttttaaaatcttcaagattttttctatcaaaacagtattttaaaatctcaatccaata 1605806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 39371253 - 39371185
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaa 83  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||||||    
T  39371253 aaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaa 39371185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 43489918 - 43489955
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttc 52  Q
    |||||||||| || ||||||||||||||||||||||||    
T  43489918 aaaatcaatacaatccaacaaagtcttttaaaatcttc 43489955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 12252474 - 12252387
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||    
T  12252474 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacaatcttttaaaatctcaatccaatacaccc 12252387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 47912612 - 47912525
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||||||    
T  47912612 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatataccc 47912525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 152859 - 152946
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  152859 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 152946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 30111791 - 30111878
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||| | ||||||||||||||||||||||| ||||    
T  30111791 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaatagtcttttaaaatctcaatccaatacaccc 30111878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 33475535 - 33475622
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||| |||| ||||    
T  33475535 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatcaaatacaccc 33475622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 43056776 - 43056689
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||    
T  43056776 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacattcttttaaaatctcaattcaatacaccc 43056689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 35089185 - 35089110
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaa 90  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||    
T  35089185 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaa 35089110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 27417736 - 27417654
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || | ||||||||||||||||||||||       |||||||||||| | |||||||||||||||||||||||    
T  27417736 aaaatcaatacaatctaacaaagtcttttaaaatcttcaagattttttctatcaaaatactcttttaaaatctcaatccaata 27417654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 46197142 - 46197106
Alignment:
Q  66 tcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||||||||||||||||||||||||| ||||    
T  46197142 tcaaaacaatcttttaaaatctcaatccaatacaccc 46197106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 20535 - 20448
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  20535 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 20448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 3109438 - 3109351
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  3109438 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 3109351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 29864840 - 29864753
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  29864840 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 29864753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 6475831 - 6475744
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||    
T  6475831 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaattcaatacaccc 6475744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 11632774 - 11632687
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  11632774 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 11632687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 10553734 - 10553816
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||    
T  10553734 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaata 10553816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 13949889 - 13949807
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||    
T  13949889 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaata 13949807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 10553527 - 10553440
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||| |||||||||||||||| ||||    
T  10553527 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtctttttaaatctcaatccaatacaccc 10553440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 40411415 - 40411503
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnnttt-ctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       ||| ||||||||||| ||||||||||||||||||||||| ||||    
T  40411415 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagatttttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 40411503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 3603548 - 3603466
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||| |||||| ||||    
T  3603548 aaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaaatttcaatctaata 3603466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 18677004 - 18676939
Alignment:
Q  30 caacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaa 95  Q
    ||||||| |||||||||||||||       |||||||||||| | |||||||||||||||||||||    
T  18677004 caacaaaatcttttaaaatcttcaagattttttctatcaaaatagtcttttaaaatctcaatccaa 18676939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 6827989 - 6827953
Alignment:
Q  66 tcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  6827989 tcaaaataatcttttaaaatctcaatccaatacaccc 6827953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 42315880 - 42315967
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  42315880 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 42315967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 8583089 - 8583008
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaat 96  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||    
T  8583089 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaat 8583008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 7808996 - 7809083
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       ||||||||||| || ||||||||||||||||||||||| ||||    
T  7808996 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaccagtcttttaaaatctcaatccaatacaccc 7809083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 7820947 - 7821034
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       ||||||||||| || ||||||||||||||||||||||| ||||    
T  7820947 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagaatttttctatcaaatcagtcttttaaaatctcaatccaatacaccc 7821034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 42217535 - 42217449
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || |||||||||||||| |||||||||       |||||||||||||| |||||||||||||||||| |||| ||||    
T  42217535 aaaatcaatacaatccaacaaagtcttt-aaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatcaaatacaccc 42217449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 3434915 - 3434833
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||||||||||||||       ||||||| |||| | ||||||||||||||||| |||||    
T  3434915 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctattaaaatagtcttttaaaatctcaattcaata 3434833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 56399038 - 56399124
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||||||  |||||||||||||||||||||||       |||||||||||||  ||||||||||||||||| ||||| ||||    
T  56399038 aaaatcaataaaattcaacaaagtcttttaaaatcttc-aaaaaatttctatcaaaacggtcttttaaaatctcaattcaatacaccc 56399124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 44930623 - 44930694
Alignment:
Q  31 aacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||||||||||||||        ||| |||||||||| ||||||||||||||||||||||| ||||    
T  44930623 aacaaagtcttttaaaatctttaagattttttttatcaaaacagtcttttaaaatctcaatccaatacaccc 44930694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 30589843 - 30589930
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  30589843 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 30589930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 36054098 - 36054011
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||| | ||||||||||||||||||||||| ||||    
T  36054098 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaatagtcttttaaaatctcaatccaatacaccc 36054011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 35731861 - 35731935
Alignment:
Q  23 taaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    ||||| ||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||    
T  35731861 taaaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacaatctgttaaaatctcaatccaata 35731935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 46223394 - 46223312
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||| |||||    
T  46223394 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaattcaata 46223312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 26292638 - 26292565
Alignment:
Q  29 ccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  26292638 ccaacaaagtcttttaaaatcttcaagatattttctatcaaaacagtcttttaaaatctcaatccaatacaccc 26292565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 2124793 - 2124706
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || |||||||||||||||||||| |||       ||| |||||||||| ||||||||||||||||||||||| ||||    
T  2124793 aaaatcaatacaatccaacaaagtcttttaaaattttcaagattttttttatcaaaacagtcttttaaaatctcaatccaatacaccc 2124706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23360575 - 23360662
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       ||| |||||||||| ||||||| ||||||||||||||| ||||    
T  23360575 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttatatcaaaacagtcttttagaatctcaatccaatacaccc 23360662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23367415 - 23367502
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       ||| |||||||||| ||||||| ||||||||||||||| ||||    
T  23367415 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttatatcaaaacagtcttttagaatctcaatccaatacaccc 23367502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 26556865 - 26556952
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || | |||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||| ||||    
T  26556865 aaaatcaatacaatcgaacaaagtcttttaaaatctttaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 26556952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23697969 - 23698057
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnnt-ttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||| ||||    
T  23697969 aaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacaccc 23698057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23716424 - 23716512
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnnt-ttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||| ||||    
T  23716424 aaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacaccc 23716512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23734880 - 23734968
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnnt-ttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||| ||||    
T  23734880 aaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacaccc 23734968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 24149925 - 24149838
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||| ||||||||||||       |||||||||||| | ||||||||||||| ||||||||| ||||    
T  24149925 aaaatcaatataatccaacaaagtcatttaaaatcttcaagattttttctatcaaaatagtcttttaaaatcttaatccaatacaccc 24149838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 38628908 - 38628821
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| ||  ||||||||||||||||||| |||       |||||||||||| | ||||||||||||||||||||||| ||||    
T  38628908 aaaatcaatacaattcaacaaagtcttttaaaattttcaagattttttctatcaaaagagtcttttaaaatctcaatccaatacaccc 38628821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 26004891 - 26004849
Alignment:
Q  60 tttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  26004891 tttctatcaaaacagtcttttaaaatctcaatccaatacaccc 26004849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 19551193 - 19551152
Alignment:
Q  62 tctatcaaaacaatcttttaaaatctcaatccaatataccct 103  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  19551193 tctatcaaaacagtcttttaaaatctcaatccaatacaccct 19551152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 50899534 - 50899470
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttt 79  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| |||||    
T  50899534 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttt 50899470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23754543 - 23754632
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntt--tctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||           |||||||| | ||||||||||||||||||||||||| ||||    
T  23754543 aaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaaaaaatctatcaacataatcttttaaaatctcaatccaatacaccc 23754632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 29941887 - 29941974
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  29941887 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 29941974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 45547913 - 45548000
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  45547913 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 45548000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 7487045 - 7486958
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||  ||||||||||||||||||||||| ||||    
T  7487045 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacggtcttttaaaatctcaatccaatacaccc 7486958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 6288644 - 6288563
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaat 96  Q
    |||||||||| || |||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||    
T  6288644 aaaatcaatacaatccaacaaagtcttttaaaatctttaaaaaaatttctatcaaaacagtcttttaaaatctcaatccaat 6288563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 35171449 - 35171389
Alignment:
Q  35 aagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaa 95  Q
    ||||||||||||||||||       |||||||||||||| |||||||||||||||||||||    
T  35171449 aagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaa 35171389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 14389420 - 14389507
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  14389420 aaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaaatctcaatccaatacaccc 14389507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 45319473 - 45319560
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  45319473 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacaccc 45319560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 52706386 - 52706473
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||    
T  52706386 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacattcttttaaaatctcaatccaatacaccc 52706473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 45535755 - 45535837
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || |||||||| |||| ||||||||||       |||||||||||||| |||||||||||||||||||||||    
T  45535755 aaaatcaatacaatccaacaaaatcttctaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaata 45535837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 26881904 - 26881822
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaata 97  Q
    |||||||||| || ||||||||||||| |||||||||        |||||||||||| | |||||||||||||||||||||||    
T  26881904 aaaatcaatacaatccaacaaagtcttctaaaatctttaagattttttctatcaaaatagtcttttaaaatctcaatccaata 26881822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 33913 - 33826
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||| | ||||||||||||||||||||||| ||||    
T  33913 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaaaagtcttttaaaatctcaatccaatacaccc 33826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 80881 - 80794
Alignment:
Q  15 aaaatcaataaaacccaacaaagtcttttaaaatcttcnnnnnnntttctatcaaaacaatcttttaaaatctcaatccaatataccc 102  Q
    |||||||||| || ||||||||||||||||||||||||       |||||||||||| | ||||||||||||||||||||||| ||||    
T  80881 aaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaaaagtcttttaaaatctcaatccaatacaccc 80794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University