View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_high_23 (Length: 339)
Name: NF1121_high_23
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 6207280 - 6206970
Alignment:
| Q |
1 |
tttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaagattataccgctgcct |
100 |
Q |
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| T |
6207280 |
tttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaagattataccgctgcct |
6207181 |
T |
|
| Q |
101 |
atttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacacactaaaataagttgtaattgtgttttattt |
200 |
Q |
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| T |
6207180 |
atttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacacactaaaataagttgtaattgtgttttattt |
6207081 |
T |
|
| Q |
201 |
tcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgtctaatgctctttttcagtggtgtgggttggacggatagtcca |
300 |
Q |
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| T |
6207080 |
tcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgtctaatgctctttttcagtggtgtgggttggacagatagtcca |
6206981 |
T |
|
| Q |
301 |
actagtattct |
311 |
Q |
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||||||||||| |
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| T |
6206980 |
actagtattct |
6206970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 6214918 - 6214771
Alignment:
| Q |
24 |
ttaattacaaaat-cttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaagattataccgctgcctatttaaatctcccagaagttca |
122 |
Q |
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| T |
6214918 |
ttaattacaaaattcttcttaaatgaaatttgcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaatctcccagaagttca |
6214819 |
T |
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| Q |
123 |
aaaggctcttcatgttaaacccataaaatggtctcattgcaggtacac |
170 |
Q |
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| T |
6214818 |
aaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacac |
6214771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 311
Target Start/End: Complemental strand, 6177401 - 6177158
Alignment:
| Q |
70 |
gacccttgtgctgaagattataccgctgcctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtaca |
169 |
Q |
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||||||||| ||||||||||||| ||| |||||||| || || |||||||| ||||||||||||||||||||| |||||||||| |||||||| | |
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| T |
6177401 |
gacccttgttctgaagattatactaatgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggt--a |
6177304 |
T |
|
| Q |
170 |
cactaaaataagttg-taatt---gtgttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaa--tgtctaat |
263 |
Q |
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||||||| |||| ||||| ||||||| ||||| |||||||||||||||||| | ||||||| | || |||||| |||||||| |||||||| |
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| T |
6177303 |
cactaaatactgttgctaattatgatgtttta-tttcctacaatttcaaaatgcatttacagtaaatgttgtactatttc-ctgaatcaatgtgtctaat |
6177206 |
T |
|
| Q |
264 |
gctctttttcagtggtgtgggttggacggatagtccaactagtattct |
311 |
Q |
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| T |
6177205 |
ggtctttttcagtgatctgagttggacagatagtccagcaagtattct |
6177158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 6214721 - 6214665
Alignment:
| Q |
256 |
tgtctaatgctctttttcagtggtgtgggttggacggatagtccaactagtattctg |
312 |
Q |
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||||||||| |||||||||||| | || ||||||| ||||||||| | ||||||||| |
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| T |
6214721 |
tgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctg |
6214665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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