View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_high_28 (Length: 308)
Name: NF1121_high_28
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 51 - 280
Target Start/End: Complemental strand, 30416401 - 30416184
Alignment:
| Q |
51 |
agatgaagaagttgttgcatgcaaattgaagggcgttgctgaaagtgtagacatcaatgttcgtttcttcaatggttcaaagttttgtgttgaagctgca |
150 |
Q |
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| T |
30416401 |
agatgaagaagttgttgcatgcaaattgaagggcgttgctgaaagtgtagacatcaatgttcgtttcttcaatggttcaaagttttgtgttgaagctgca |
30416302 |
T |
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| Q |
151 |
ctcgaatccacagttgaatccttcaaagagcttgtcgttcgaaactgtgacatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcaga |
250 |
Q |
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| T |
30416301 |
ctcga------------atccttcaaagagcttgtcgttggaaactgtgacatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcaga |
30416214 |
T |
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| Q |
251 |
atcatcaatcccttaaaagctaaggtacat |
280 |
Q |
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| T |
30416213 |
atcatcaatcccataaaagctatggtacat |
30416184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 51 - 280
Target Start/End: Complemental strand, 31244814 - 31244585
Alignment:
| Q |
51 |
agatgaagaagttgttgcatgcaaattgaagggcgttgctgaaagtgtagacatcaatgttcgtttcttcaatggttcaaagttttgtgttgaagctgca |
150 |
Q |
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|||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31244814 |
agataaagaagttgctgcatgcaaattgaagggcgtcgctgaaagtgtaaacatcaatgttcgttacttcaatggttcaaagttttgtgttgaagctgca |
31244715 |
T |
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| Q |
151 |
ctcgaatccacagttgaatccttcaaagagcttgtcgttcgaaactgtgacatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcaga |
250 |
Q |
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| T |
31244714 |
ctagaatccacagttgaatccttcaaacagcttatcattggaaactgtgacatcccaatccaaaatcaaagactcatttacaagggaaacatcttgcaga |
31244615 |
T |
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| Q |
251 |
atcatcaatcccttaaaagctaaggtacat |
280 |
Q |
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| T |
31244614 |
ataatcaatccctgcaaagctatggtacat |
31244585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 7206943 - 7206881
Alignment:
| Q |
200 |
acatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcagaatcatcaatccctt |
264 |
Q |
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|||||||||| |||||||||||||||||| |||| ||||||| ||||||||| ||||||||||| |
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| T |
7206943 |
acatcccaatacaaaatcaaagactcatttacaa-cgaaaaat-ttgcagaataatcaatccctt |
7206881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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