View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1121_high_39 (Length: 251)
Name: NF1121_high_39
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_high_39 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 11228276 - 11228519
Alignment:
| Q |
8 |
cgaagaatatagtatagatcaatggcagtgtattgaggttattattttgactttgttaannnnnnnnngtttgttgatgtgccttttatatcaaaatatt |
107 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11228276 |
cgaaaaatgtagtatagatcaatggcagtgtatcgaggttattattttgactttgttaatttttgtttgtttgttgatgtgccttttatatcaaaatatt |
11228375 |
T |
|
| Q |
108 |
gacctttaaatacatttttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11228376 |
gacctttaaatacatttttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaat |
11228475 |
T |
|
| Q |
208 |
atagcttaaggaatgcatacttctaccccaagaaaactaaagaa |
251 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11228476 |
atagcttaaggaatacatacttctaccccaagaaaactaaagaa |
11228519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 13551799 - 13552007
Alignment:
| Q |
8 |
cgaagaatatagtatagatcaatggcagtgtattgaggttattattttgactttgttaannnnnnnnngtttgttgatgtgccttttatatcaaaatatt |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
13551799 |
cgaaaaatgtagtatagatcaatggcagtgtattgaggtttatattttgactttgttaatttttttt-gtttgttgatgcgctttttatatcaaaatatt |
13551897 |
T |
|
| Q |
108 |
gacctttaaatacatttttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaat |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13551898 |
gacctttaaatacatttctagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactagcggatagatggagatcctataaat |
13551997 |
T |
|
| Q |
208 |
atagcttaag |
217 |
Q |
| |
|
|||||||||| |
|
|
| T |
13551998 |
atagcttaag |
13552007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University