View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_high_5 (Length: 586)
Name: NF1121_high_5
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 137 - 557
Target Start/End: Complemental strand, 22158808 - 22158388
Alignment:
| Q |
137 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaatctaactacat |
236 |
Q |
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| T |
22158808 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaatctaactacat |
22158709 |
T |
|
| Q |
237 |
gtgatttgatatccatctatctatctagatacaacaaaggctcgtcacttcagtttcatgattcccgcataaaaaagtataaaagataggaaaaatgagt |
336 |
Q |
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| T |
22158708 |
gtgatttgatatctatctatctatctagatacaacaaaggctcgtcacttcagtttcatgattcccgcgtaaaaaagtataaaagataggaaaaatgagt |
22158609 |
T |
|
| Q |
337 |
aatcagtacttgtttttagtctacaacaaagaaaagtaaaccatggcatctacaatttgattaaaaataacacagccgggaagcaatcagcatctctttc |
436 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158608 |
aatcagtacttgcttttagtctacaacaaagaaaagtaatccatggcatctacaatttgattaaaaataacacagccgggaagcaatcagcatctctttc |
22158509 |
T |
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| Q |
437 |
gaccattgcccttcgagatgtgtctcacttaccaagagcttgaactcccttatgccacaagaggaaagtgccagtatcaggctctatgtcaccaccagct |
536 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158508 |
gaccgttgcccttcgagatgtttctcacttaccaagagcttgaacacccttatgccacaagaggaaagtgccagtatcaggctctatgtcaccaccagct |
22158409 |
T |
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| Q |
537 |
acaatgttatacatccaacct |
557 |
Q |
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| T |
22158408 |
acaatgttatacatccaacct |
22158388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22159006 - 22158885
Alignment:
| Q |
1 |
cgttggacacgtgattggtgacgttgtaatggtccctttttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttcttcat |
100 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22159006 |
cgttggacatgtgattggtaacgttgtaatggtccctttttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttctacat |
22158907 |
T |
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| Q |
101 |
ttgcattgtaagtgtctatctt |
122 |
Q |
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||||||||||| |||||||||| |
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| T |
22158906 |
ttgcattgtaaatgtctatctt |
22158885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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