View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1121_low_10 (Length: 523)
Name: NF1121_low_10
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 24833932 - 24833549
Alignment:
| Q |
13 |
aatatatatgaaattggggatttggtaaatagcttgaaatcgaaatgcttccctgaaacatattaaggattcatag-aagcaacatagattgaaattagg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24833932 |
aatatatatgaaattggggatttggtaaatagcttgaaatcgaaatgcttccctgaaacatattgaggattcatagcaagcaacatagattgaaattagg |
24833833 |
T |
|
| Q |
112 |
ctgacacaaagttgtctttgcaaataagaaaaatattgggttgcacatattctataccagaatgttttattcgatttttatcagggggctatgtagttgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24833832 |
ctgacacaaagttgtctttgcaaataagaaaaatattgggttgcacatattctataccagaatgttttattcgatttttatcagggggctatgtagttgt |
24833733 |
T |
|
| Q |
212 |
ccaatataatattgacctccacttcaattttctctataactctgatctgaatgatttatattattagaatttgtttgctagttaacctttttcatttgtc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24833732 |
ccaatataatattgacctccacttcaattttctctataactctgatctgaatgatttatattattagaatttgtttgctagttaacctttttcatttttc |
24833633 |
T |
|
| Q |
312 |
cattaacttacaggtgtcactgccatccttttcccttgggttgccagcgtacgaggtccttgctctgtctgaatcatcttctaa |
395 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24833632 |
cattaacttacaggggtcactgccatccttttcccttgggttgccagcgtacgaggtccttgctctgtctgaatcatcttctaa |
24833549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 267 - 495
Target Start/End: Complemental strand, 18187311 - 18187083
Alignment:
| Q |
267 |
ttatattattagaatttgtttgctagttaacctttttcatttgtccattaacttacaggtgtcactgccatccttttcccttgggttgccagcgtacgag |
366 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||| | |
|
|
| T |
18187311 |
ttatgttattagaattcatttgttagttaacccttttcatccgtccattaacttacaggtgtcactgccatccttttcgcttgggttgccggcatactat |
18187212 |
T |
|
| Q |
367 |
gtccttgctctgtctgaatcatcttctaacttgtctcgctctgatggcatcaggtcagtggcggagaccccatgtaccactct--ctctcttagtccaaa |
464 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| |||||| || ||||||||||| || ||||||||||| |||| ||||||| |||||| |
|
|
| T |
18187211 |
gtccttgctttgtctgaatcatcttccaacttgtctcgctatgatggtattaggtcagtggctgactccccatgtacccctctcgctctcttcgtccaa- |
18187113 |
T |
|
| Q |
465 |
tacacacacaactgaacacaatgttttattt |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18187112 |
-acacacacaactgaacacaatgttttattt |
18187083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 18187375 - 18187336
Alignment:
| Q |
227 |
cctccacttcaattttctctataactctgatctgaatgat |
266 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
18187375 |
cctccacttcatttttctctatatctctgatctgaatgat |
18187336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University