View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_14 (Length: 508)
Name: NF1121_low_14
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 29 - 496
Target Start/End: Complemental strand, 24779153 - 24778686
Alignment:
| Q |
29 |
aattctttgtgggattgagttaattgattgaatctttagtttctgtttgattttagtttgaaacctatataagggtctttttaatgggtttagtgttgaa |
128 |
Q |
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| T |
24779153 |
aattctttgtgggattgagttaattgattgaatctttagtttctgtttgattttagtttgaaacctatataagggtctttttaatgggtttagtgttgaa |
24779054 |
T |
|
| Q |
129 |
atatcacgtctg--atttattttcttgatattggagtagtttttcttatttctcatttgtaaaaatgttcttgtaactgttctttaagattttagaagct |
226 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24779053 |
atatcacgtctgatatttattttcttgatattggagtagtttttcttatttctcatttgtaaaaatgttcttgtaactgttctttaagattttagaagct |
24778954 |
T |
|
| Q |
227 |
tgtatgctgagcagggannnnnnnngctaaagaatgggtttttgttgcatgcttaactgatatatgatttgaattttagggattaatgtttaattcttta |
326 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778953 |
tgtatgctgagcagggattttttttgctaaagaatgggtttttgttgcatgcttaactgatatatgatttgaattttagggattaatgtttaattcttta |
24778854 |
T |
|
| Q |
327 |
atatttgtatgtgccctgttttgagatattataatcttgcatgtggattatggaacatatgttcttttttatgaacgttttcannnnnnnngcatgctta |
426 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
24778853 |
atatttgtatgtgccctg--ttgagatattataatcttgcatgtggattatggaacatatgttcttttttatgatcgttttcattttttttgcatgctta |
24778756 |
T |
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| Q |
427 |
actggtctagagcttggtgcttaatgttgtatcgcttatgacttattagttagccattgtagttcatatt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778755 |
actggtctagagcttggtgcttaatgttgtatcgcttatgacttattagttagccattgtagttcatatt |
24778686 |
T |
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