View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_16 (Length: 502)
Name: NF1121_low_16
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_16 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 101 - 495
Target Start/End: Original strand, 35882710 - 35883099
Alignment:
| Q |
101 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
200 |
Q |
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| T |
35882710 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
35882809 |
T |
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| Q |
201 |
atccaaacttgttgcctctttctggttactgtattgcaggtatgt----gtgtaccgtacagnnnnnnnntgattcaatgttttgaattttgatttcttt |
296 |
Q |
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| T |
35882810 |
atccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtacagaaaaaaaatgattcaatgttttgaattttgatttcttt |
35882909 |
T |
|
| Q |
297 |
cgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggtttttaattttctaatgtcctattctctgttccataacatggt |
396 |
Q |
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| T |
35882910 |
cgagtagttaccttactgcaa-----ctatcattcattaatggct----ttcacgggtttttaattttctaatgtcctattctctgttccataacatggt |
35883000 |
T |
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| Q |
397 |
tgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctggatatgattgcgtttgggtatttgtgtctctgctc |
495 |
Q |
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| T |
35883001 |
tgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctggatatgattgcgtttgggtatttgtgtctttgctc |
35883099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 101 - 495
Target Start/End: Original strand, 24456911 - 24457300
Alignment:
| Q |
101 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
200 |
Q |
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| T |
24456911 |
cccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttgttgacttatcgaaactgaaac |
24457010 |
T |
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| Q |
201 |
atccaaacttgttgcctctttctggttactgtattgcaggtatgt----gtgtaccgtacagnnnnnnnntgattcaatgttttgaattttgatttcttt |
296 |
Q |
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| T |
24457011 |
atccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtacagaaaaaaaatgattcaatgttttgaattttgatttcttt |
24457110 |
T |
|
| Q |
297 |
cgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggtttttaattttctaatgtcctattctctgttccataacatggt |
396 |
Q |
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| T |
24457111 |
cgagtagttaccttactgcaa-----ctatcattcattaatggct----ttcacgggtttttaattttctaatgtcctattctctgttccataacatggt |
24457201 |
T |
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| Q |
397 |
tgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctggatatgattgcgtttgggtatttgtgtctctgctc |
495 |
Q |
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| T |
24457202 |
tgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctggatatgattgcgtttgggtatttgtgtctttgctc |
24457300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 2264 - 2132
Alignment:
| Q |
111 |
tacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttg-ttgacttatcgaaactgaaacatccaaact |
209 |
Q |
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||||||||||||| |||||||||||| ||| ||||| |||||| ||||||| |||| | || |||| ||||||| || || || |||||||| || |
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| T |
2264 |
tacacgtggcaattaaggttcttgaaaatgctagagaggttgatcatgatgatgctgttgatacttttgtttgacttgtctaagcttaaacatcccaatc |
2165 |
T |
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| Q |
210 |
tgttgcctctttctggttactgtattgcaggta |
242 |
Q |
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| T |
2164 |
ttttgccactttctggttactgcatcgcaggta |
2132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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