View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1121_low_18 (Length: 427)
Name: NF1121_low_18
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 61 - 399
Target Start/End: Original strand, 48659909 - 48660250
Alignment:
| Q |
61 |
ttgcactttcacattatcttttattatttgacatagtgaaagtgttgtgttcaaaatctaatggcacttgttgttggtagtagtactatatgcaaacccc |
160 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659909 |
ttgcacttgcacattctcttttatcatttgacatagtgaaagtgttgtgttcaaaatctaatggcacttgttgttggtagtagtactatatgcaaacccc |
48660008 |
T |
|
| Q |
161 |
aaattgtattccttcatctgtctgggaatttgaagaaacaatcagtgtcggaaatctcatttccaactctttcactttcaattt---ctacctccactcg |
257 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48660009 |
aaattggattccttcatctgtctgggaatttgaagaaacaatccgtatcggaaatctcatttccaactctttcactttcaatttctactacctccactcg |
48660108 |
T |
|
| Q |
258 |
ctatgcaccttctccatggttttgctccaactcctctgaatcttctgtcgaatgtaatatgccttcttcaaccaaaatcttcatcaaaggtaactttctt |
357 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48660109 |
ctatgcaccttctccatcgttttgctccacctcctctgaatcttctgtcgaatgtaatatgccttcttcaaccaaaatcttcatcaaaggtaactttctt |
48660208 |
T |
|
| Q |
358 |
ttgtccttagccctttaatcaataatgggtctctttcaattt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48660209 |
ttgtccttagccctttaatcaataatgggtctctttcaattt |
48660250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 48659239 - 48659272
Alignment:
| Q |
13 |
agatagaagtagaagtagattaaaagcaaaactt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
48659239 |
agatagaagtagaagtagattaaaagcaaaactt |
48659272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University