View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1121_low_2 (Length: 753)

Name: NF1121_low_2
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1121_low_2
NF1121_low_2
[»] chr1 (18 HSPs)
chr1 (7-453)||(5466402-5466848)
chr1 (585-724)||(5467175-5467314)
chr1 (502-688)||(3491413-3491593)
chr1 (502-689)||(298192-298376)
chr1 (502-568)||(48022822-48022888)
chr1 (502-682)||(21276540-21276715)
chr1 (502-682)||(38788845-38789021)
chr1 (583-687)||(8550368-8550472)
chr1 (502-568)||(52141476-52141542)
chr1 (503-637)||(5198838-5198969)
chr1 (495-567)||(15881094-15881166)
chr1 (502-569)||(943194-943261)
chr1 (492-567)||(12521397-12521472)
chr1 (532-569)||(5466848-5466885)
chr1 (613-682)||(47370427-47370496)
chr1 (516-565)||(48722691-48722740)
chr1 (502-538)||(27211442-27211478)
chr1 (502-565)||(47370292-47370355)
[»] chr8 (16 HSPs)
chr8 (502-688)||(30069701-30069883)
chr8 (502-683)||(11257854-11258029)
chr8 (502-655)||(26014845-26014993)
chr8 (491-567)||(9402858-9402934)
chr8 (493-565)||(38869869-38869941)
chr8 (595-695)||(37456102-37456202)
chr8 (581-676)||(7107505-7107600)
chr8 (502-565)||(36660694-36660757)
chr8 (503-565)||(5895998-5896060)
chr8 (502-568)||(36068413-36068479)
chr8 (511-568)||(8072448-8072505)
chr8 (581-652)||(1042780-1042851)
chr8 (581-652)||(16037310-16037381)
chr8 (502-565)||(31410983-31411046)
chr8 (503-546)||(40651740-40651783)
chr8 (502-540)||(31451374-31451412)
[»] chr3 (22 HSPs)
chr3 (502-684)||(13863589-13863767)
chr3 (502-568)||(37238766-37238832)
chr3 (502-568)||(972520-972586)
chr3 (581-684)||(36923581-36923684)
chr3 (581-687)||(7681616-7681722)
chr3 (502-568)||(28963362-28963428)
chr3 (585-658)||(13433736-13433809)
chr3 (493-568)||(28945929-28946004)
chr3 (581-682)||(21490370-21490471)
chr3 (504-565)||(43310565-43310626)
chr3 (588-632)||(50524321-50524365)
chr3 (595-686)||(43310338-43310429)
chr3 (502-564)||(52915456-52915518)
chr3 (590-687)||(28451800-28451897)
chr3 (502-538)||(38773649-38773685)
chr3 (502-538)||(51980692-51980728)
chr3 (502-565)||(35982370-35982433)
chr3 (502-565)||(52378685-52378748)
chr3 (15-60)||(4565659-4565705)
chr3 (588-638)||(8702079-8702129)
chr3 (588-638)||(9053966-9054016)
chr3 (503-565)||(46748980-46749042)
[»] chr2 (11 HSPs)
chr2 (502-684)||(14776270-14776447)
chr2 (581-689)||(9374021-9374129)
chr2 (502-652)||(40534250-40534394)
chr2 (502-565)||(10500420-10500483)
chr2 (502-686)||(32227431-32227612)
chr2 (581-657)||(30326106-30326182)
chr2 (502-687)||(35327751-35327931)
chr2 (502-559)||(27414051-27414108)
chr2 (589-682)||(33830302-33830395)
chr2 (518-567)||(43305604-43305653)
chr2 (493-538)||(44721342-44721387)
[»] chr7 (11 HSPs)
chr7 (502-687)||(38073572-38073752)
chr7 (502-652)||(20884456-20884604)
chr7 (502-567)||(39854086-39854151)
chr7 (502-565)||(38652637-38652700)
chr7 (502-565)||(45513091-45513154)
chr7 (504-565)||(8073536-8073597)
chr7 (583-632)||(11667046-11667095)
chr7 (581-683)||(21148389-21148491)
chr7 (502-539)||(11667120-11667157)
chr7 (502-536)||(38073709-38073743)
chr7 (605-682)||(38652729-38652806)
[»] chr4 (14 HSPs)
chr4 (502-687)||(22409329-22409509)
chr4 (501-688)||(32318510-32318691)
chr4 (502-633)||(20574856-20574985)
chr4 (502-688)||(30537925-30538107)
chr4 (502-569)||(38794104-38794171)
chr4 (581-686)||(10109215-10109320)
chr4 (585-652)||(14958401-14958468)
chr4 (502-567)||(53039379-53039444)
chr4 (503-558)||(4960354-4960409)
chr4 (585-683)||(38793721-38793819)
chr4 (583-642)||(4960430-4960489)
chr4 (502-568)||(30255186-30255255)
chr4 (502-536)||(17268776-17268810)
chr4 (516-565)||(14136576-14136625)
[»] scaffold0154 (1 HSPs)
scaffold0154 (581-688)||(36406-36513)
[»] scaffold0102 (1 HSPs)
scaffold0102 (581-682)||(21233-21334)
[»] chr6 (3 HSPs)
chr6 (502-563)||(33972591-33972652)
chr6 (502-551)||(3213646-3213695)
chr6 (502-567)||(12141692-12141757)
[»] scaffold0007 (1 HSPs)
scaffold0007 (502-687)||(260294-260474)
[»] chr5 (6 HSPs)
chr5 (585-652)||(25836942-25837009)
chr5 (502-569)||(25837429-25837496)
chr5 (523-568)||(21369224-21369269)
chr5 (581-652)||(10044224-10044295)
chr5 (492-538)||(28085307-28085353)
chr5 (585-637)||(5402771-5402824)
[»] scaffold0061 (1 HSPs)
scaffold0061 (502-568)||(9076-9142)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Original strand, 5466402 - 5466848
Alignment:
Q  7 tctccaacaatatacaacaaattgaatcgatgataaaatgcaatcaacatgattcttgattgcaatttctaatgtgattgaacaaaacaactaaatcaaa 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||    
T  5466402 tctccaaaaatatacaacaaattgaatcgatgataaaatgcaatcaacatgattgttgattgcaatttctaatgtgatttaacaaaacaattaaatcaaa 5466501  T
Q  107 attattaagaaaatggatttgctatagatcaattacattatcaaattctacgatcaaacatatacataatcatcaagttttaatttgaatatacgaaaaa 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5466502 attattaagaaaatggatttgctatagatcaatcacattatcaaattctacaatcaaacatatacataatcatcaagttttaatttgaatatacgaaaaa 5466601  T
Q  207 tgtagtttacacttaaaaataatcatccttttagctgacctcgtcagacaagcaattagactattaggcgaggaagcatccctgccgatttaaagcggaa 306  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5466602 tgtagtttatacttaaaaataatcattcttttagctgacctcgtcagacaaacaattagactattaggcgaggaagcatccctgccgatttaaagcggaa 5466701  T
Q  307 attttgttatgcttcatcatacaattatgtccaaacaatacaacaaaatctatgttacatttcattattaattttgttctattccggtatgttatattga 406  Q
    ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  5466702 attctgttatgcttcgtcatacaattatgtccaaacaatacaacgaaatctatgttacattttgttattaattttgttctattccggtatgttctattga 5466801  T
Q  407 gttccatcaatctaaaccgagctttgagctctccttattacaatatg 453  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  5466802 gttccatcaatttaaaccgaactttgagctctccttattacaatatg 5466848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 585 - 724
Target Start/End: Original strand, 5467175 - 5467314
Alignment:
Q  585 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcc 684  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||| ||||||||||     
T  5467175 tattaaacaatttgaataacaaattcacacaatttccaatacataattactatcaatgaaattcttaatatgtgttctaagggcacaaattaatatttct 5467274  T
Q  685 cttttctaattacactattgatcataatggtaagagtagt 724  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5467275 cttttctaattacactattgatcataatggtaagagtagt 5467314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 502 - 688
Target Start/End: Original strand, 3491413 - 3491593
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||            ||||||||||| | ||||||     
T  3491413 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatg------aaaaaattaatattaaaaattttgagc 3491506  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 688  Q
    || |||||  ||||||||||||||||||||| |||| ||||  |||||||| || ||  |||| |||||||||||| ||||||||||    
T  3491507 aataaattatcacaatttccaatacataatttctattagtggaattcttaacatttgccctaagggcacaagttaacatttcccttt 3491593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 502 - 689
Target Start/End: Complemental strand, 298376 - 298192
Alignment:
Q  502 gttaacttgtgccgttagggca-catgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgag 600  Q
    ||||||||||||| ||| |||| ||||||||||||||||| |||||||||| | ||||||||||||||            ||| |||||||||| |||||    
T  298376 gttaacttgtgcccttaaggcaacatgttaagcattaatttcattccattaatagtaagaatttaatg----aaaaaaaattagtattaaacaacttgag 298281  T
Q  601 taacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctttt 689  Q
    ||| ||||| ||||||||||||||||| ||||||||| ||||  |||||||| || ||  |||| |||||||||||| |||||||||||    
T  298280 taataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaagggcacaagttaacatttccctttt 298192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 502 - 568
Target Start/End: Complemental strand, 48022888 - 48022822
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  48022888 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatg 48022822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 682
Target Start/End: Original strand, 21276540 - 21276715
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||            |||||||||||||  ||| ||    
T  21276540 gttaacttgtgcccttaggacacatgttaagcattaatttcattctattaatggtaagaatttaatg-----aaaaaaattaatattaaacatcttgcgt 21276634  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 682  Q
     | ||||| ||||||||| |||||||||||| |||| ||||  |||||||  || ||  |||| | |||||||||||||||    
T  21276635 gataaattaacacaattttcaatacataatttctattagtggaattcttatcatgtgccctaaggacacaagttaatattt 21276715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 682
Target Start/End: Original strand, 38788845 - 38789021
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||| | ||| |||||||||||| |||||||| ||||| |||| | ||||||||||||||            ||| |||||||||| || |||    
T  38788845 gttaacttgtgtcattatggcacatgttaaacattaatttcattctattaatagtaagaatttaatg---aatttttttttagtattaaacaacttaagt 38788941  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 682  Q
    || ||||| ||||||||||||||||||||||||||| ||| | |||||||| ||||  | ||| |||||||||||| ||||    
T  38788942 aataaattaacacaatttccaatacataattactattagtaaaattcttaacatatact-taagggcacaagttaacattt 38789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 687
Target Start/End: Original strand, 8550368 - 8550472
Alignment:
Q  583 aatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 682  Q
    |||||||||| |||| || || ||||| |||||||||||||||||||||| |||| ||||  |||||||| ||||||  ||  |||||||||||| ||||    
T  8550368 aatattaaactatttaagcaataaattaacacaatttccaatacataatttctattagtggaattcttaacatatgtcatacgggcacaagttaacattt 8550467  T
Q  683 ccctt 687  Q
    |||||    
T  8550468 ccctt 8550472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 52141476 - 52141542
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||||| || ||||||| ||||||||    
T  52141476 gttaacttgtgcccttagggcatatgttaagcattaatttcattccactaatggtaagtatttaatg 52141542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 637
Target Start/End: Complemental strand, 5198969 - 5198838
Alignment:
Q  503 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagta 602  Q
    |||||||||||  |||||||||||||||| |||||||| |||| ||| | ||||||||||||||||            | ||||||||||| ||||| ||    
T  5198969 ttaacttgtgctcttagggcacatgttaaacattaatttcatttcataaatggtaagaatttaatg---aaaaaaaaataaatattaaacattttgaata 5198873  T
Q  603 acaaattcacacaatttccaatacataattactat 637  Q
    | ||||| |||||||||||||||||||||| ||||    
T  5198872 ataaattaacacaatttccaatacataatttctat 5198838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 567
Target Start/End: Original strand, 15881094 - 15881166
Alignment:
Q  495 gggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 567  Q
    ||||| ||||||||||| || | |||| |||| ||||||||||||| |||||||||| |||||||||||||||    
T  15881094 gggtcacgttaacttgtaccttaagggtacatattaagcattaatttcattccattaatggtaagaatttaat 15881166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 943261 - 943194
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatgg 569  Q
    ||||||||||||| | |||| ||||||||| |||||||| |||||||||| | |||||||||||||||    
T  943261 gttaacttgtgccctcagggtacatgttaaacattaatttcattccattaatagtaagaatttaatgg 943194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 492 - 567
Target Start/End: Complemental strand, 12521472 - 12521397
Alignment:
Q  492 aatgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 567  Q
    ||||||||  ||||||||||||| | ||| |||||||||| |||||||| ||||| |||| |||||||||||||||    
T  12521472 aatgggtcgtgttaacttgtgccctaaggacacatgttaaacattaatttcattctattaatggtaagaatttaat 12521397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 532 - 569
Target Start/End: Original strand, 5466848 - 5466885
Alignment:
Q  532 gcattaattgcattccattagtggtaagaatttaatgg 569  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5466848 gcattaattgcattccattagtggtaagaatttaatgg 5466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 682
Target Start/End: Original strand, 47370427 - 47370496
Alignment:
Q  613 acaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 682  Q
    |||||||||||||||||||| |||| ||||  |||||||||||||||  ||| | ||||||||| |||||    
T  47370427 acaatttccaatacataatttctataagtggaattcttaatatatgtgataaggacacaagttagtattt 47370496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 565
Target Start/End: Original strand, 48722691 - 48722740
Alignment:
Q  516 ttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    |||| ||||||||||| |||||||| |||||||||| |||||||||||||    
T  48722691 ttagagcacatgttaaacattaatttcattccattaatggtaagaattta 48722740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 27211478 - 27211442
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaa 538  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27211478 gttaacttgtgcccttagggcacatgttaagcattaa 27211442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 565
Target Start/End: Original strand, 47370292 - 47370355
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    |||||||||||   ||| ||||||||||||||||||||  |||| ||||| |||||||||||||    
T  47370292 gttaacttgtgtaattatggcacatgttaagcattaatgtcatttcattaatggtaagaattta 47370355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 502 - 688
Target Start/End: Original strand, 30069701 - 30069883
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||||||||| |  ||||||||||||||           ||| |||||||||| ||||||    
T  30069701 gttaacttgtgctcttagggcacatgttaagcatttatttcattccattaataataagaatttaatggaaaaaag----ttagtattaaacaacttgagt 30069796  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 688  Q
    || ||||| ||||||||||||||||| ||||||||| ||||  |||||||| || ||   ||| |||||||||||| ||||||||||    
T  30069797 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccttaagggcacaagttaacatttcccttt 30069883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 683
Target Start/End: Complemental strand, 11258029 - 11257854
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||| | || ||||||||||||||||            ||||||||||||| ||| ||     
T  11258029 gttaacttgtgcccttagggcacatgttaaacattattttcattcaaataatggtaagaatttaatg------aaaaaattaatattaaacattttaagc 11257936  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttc 683  Q
    || ||||| |||||||||  ||||||||||| |||| ||||  |||||||| || ||  |||| |||||||||||| |||||    
T  11257935 aataaattaacacaatttataatacataatttctattagtggaattcttaacatgtgccctaagggcacaagttaacatttc 11257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 655
Target Start/End: Original strand, 26014845 - 26014993
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    |||||||||| || |||||||||||||||||||||||| ||||||||||| | ||||||||||| ||            |||| |||||||| ||||| |    
T  26014845 gttaacttgtacccttagggcacatgttaagcattaatagcattccattaatagtaagaatttattg-----aaaaaaattaacattaaacattttgaat 26014939  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatat 655  Q
    || ||||| |||||| ||||||||||||||| |||| | ||  |||||||||||    
T  26014940 aataaattaacacaaattccaatacataatttctattaatggtattcttaatat 26014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 491 - 567
Target Start/End: Original strand, 9402858 - 9402934
Alignment:
Q  491 taatgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 567  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||| || |||| || || |||||||||||||||    
T  9402858 taatgggtcatgttaacttctgcccttagggcacatgttaagcattattttcatttcaataatggtaagaatttaat 9402934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 38869941 - 38869869
Alignment:
Q  493 atgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    |||||||  ||||||||||||| ||| |||||||||||| |||||||| |||||||||| ||||| |||||||    
T  38869941 atgggtcatgttaacttgtgcccttaaggcacatgttaaacattaatttcattccattaatggtatgaattta 38869869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 695
Target Start/End: Original strand, 37456102 - 37456202
Alignment:
Q  595 tttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttttctaat 694  Q
    ||||||||| ||||| |||||||||||||||||||||| |||| ||||  |||||||| |  ||  |||| |||||||||||  |||||| |||| ||||    
T  37456102 tttgagtaataaattaacacaatttccaatacataatttctattagtggaattcttaacacgtgccctaagggcacaagttagcatttccattttttaat 37456201  T
Q  695 t 695  Q
    |    
T  37456202 t 37456202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 676
Target Start/End: Original strand, 7107505 - 7107600
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagtta 676  Q
    |||||||| |||| |||||| || ||||| |||||||||||||||||||||| |||| ||||  |||||||| || ||   ||| |||||||||||    
T  7107505 ttaatattcaacattttgagcaataaatttacacaatttccaatacataatttctattagtggaattcttaacatgtgccataagggcacaagtta 7107600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 36660757 - 36660694
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||||| ||| |||| ||||||| |||||||| | |||||||| |||||||||||||    
T  36660757 gttaacttgtgcccttaaggcatatgttaaccattaatttcgttccattaatggtaagaattta 36660694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 565
Target Start/End: Original strand, 5895998 - 5896060
Alignment:
Q  503 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||| || |||||||| |||||||||||||||| |||||| ||| | |||||||||||    
T  5895998 ttaacttgtacccttagggcatatgttaagcattaatttcattcctttaatagtaagaattta 5896060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 568
Target Start/End: Complemental strand, 36068479 - 36068413
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    ||||||||||||| | | | |||||||||||||||| || ||||||| || ||||||||||||||||    
T  36068479 gttaacttgtgccctcaagacacatgttaagcattattttcattccaataatggtaagaatttaatg 36068413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 568
Target Start/End: Original strand, 8072448 - 8072505
Alignment:
Q  511 tgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    |||| |||||||||||||||||||||| || ||||| | || ||||||||||||||||    
T  8072448 tgcccttagggcacatgttaagcattattttcattcaaataatggtaagaatttaatg 8072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 652
Target Start/End: Original strand, 1042780 - 1042851
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 652  Q
    ||||||||||||| ||| || || ||||| ||||||||| |||||||||||| |||| ||||| ||| ||||    
T  1042780 ttaatattaaacattttaagcaataaattaacacaattttcaatacataatttctattagtgaaatttttaa 1042851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 652
Target Start/End: Complemental strand, 16037381 - 16037310
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 652  Q
    ||||||||||||| |||||  || ||||| | ||||||||| |||||||||| |||||||||  ||||||||    
T  16037381 ttaatattaaacattttgaccaataaattaatacaatttccgatacataatttctatcagtggaattcttaa 16037310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 31411046 - 31410983
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    |||||||||| || |||||| |||||||||||||||||| |||| | ||| | |||||||||||    
T  31411046 gttaacttgtaccattagggtacatgttaagcattaatttcatttctttaatagtaagaattta 31410983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 546
Target Start/End: Complemental strand, 40651783 - 40651740
Alignment:
Q  503 ttaacttgtgccgttagggcacatgttaagcattaattgcattc 546  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||    
T  40651783 ttaacgtgtgcctttagggcacatgttaagcattaatttcattc 40651740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 540
Target Start/End: Complemental strand, 31451412 - 31451374
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaatt 540  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  31451412 gttaacttgtgctcttagggcacatgttaagcattaatt 31451374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 9e-26; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 502 - 684
Target Start/End: Original strand, 13863589 - 13863767
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||| ||||| | |||||||||||||||           ||| |||||||||| ||||||    
T  13863589 gttaacttgtgcccttaggacacatgttaagcattaatttcatttcattaatagtaagaatttaatgg---aaaaaaaattagtattaaacaacttgagt 13863685  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcc 684  Q
    || ||||| ||||||||||||||||| ||||||||| ||||  |||||||| || ||  || |||||||||||||| ||||||    
T  13863686 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccct-aaggcacaagttaacatttcc 13863767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 37238766 - 37238832
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  37238766 gttaacttgtgcccttagggcacatgttaagcattaatttcattccattaatggtaataatttaatg 37238832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 502 - 568
Target Start/End: Complemental strand, 972586 - 972520
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    ||||||||||||  ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  972586 gttaacttgtgcttttagggcacatgttaagcattaatttcatttcattaatggtaagaatttaatg 972520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 581 - 684
Target Start/End: Original strand, 36923581 - 36923684
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    ||||||||||||| |||||| || ||||| |||||||||||||||||||||| |||| ||||  ||||||||||| ||  ||||  |||||| |||| ||    
T  36923581 ttaatattaaacattttgagcaataaattaacacaatttccaatacataatttctattagtggaattcttaatatgtgccctaagagcacaaattaacat 36923680  T
Q  681 ttcc 684  Q
    ||||    
T  36923681 ttcc 36923684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 581 - 687
Target Start/End: Original strand, 7681616 - 7681722
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    |||||||||||| | |||| ||| ||||| ||||||||||||||||| ||||||||| |||   |||| ||| ||||| |||||  ||||||||||| ||    
T  7681616 ttaatattaaactacttgaataataaattaacacaatttccaatacacaattactattagtagaattcataacatatgctctaagagcacaagttaaaat 7681715  T
Q  681 ttccctt 687  Q
    |||||||    
T  7681716 ttccctt 7681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 28963362 - 28963428
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    |||||||||||   |||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  28963362 gttaacttgtgttcttagggcacatgtttagcattaatttcattccattaatggtaagaatttaatg 28963428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 658
Target Start/End: Original strand, 13433736 - 13433809
Alignment:
Q  585 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatg 658  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||| ||||| ||| ||||  ||||||||||||||    
T  13433736 tattaaacaatttgagtaataaattcacataattttcaatacaaaattattattagtggaattcttaatatatg 13433809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 28946004 - 28945929
Alignment:
Q  493 atgggtcccgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    |||||||  ||||||||||||| ||| |||| ||||||| |||||||| |||||||||| |||||| |||||||||    
T  28946004 atgggtcatgttaacttgtgcccttaaggcatatgttaaacattaatttcattccattaatggtaaaaatttaatg 28945929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 581 - 682
Target Start/End: Complemental strand, 21490471 - 21490370
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    ||||||||||||| |||||  || ||||| ||||||||||||||| ||||||  ||| ||||  |||||||| || || ||||| | |||||||||||||    
T  21490471 ttaatattaaacattttgaacaataaattaacacaatttccaatatataatttatattagtggaattcttaacatgtgctctaaggacacaagttaatat 21490372  T
Q  681 tt 682  Q
    ||    
T  21490371 tt 21490370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 504 - 565
Target Start/End: Complemental strand, 43310626 - 43310565
Alignment:
Q  504 taacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||| | ||||||||||||||||||||||  |||||||||| ||| |||||||||    
T  43310626 taacttgtgccctcagggcacatgttaagcattaatgtcattccattaatggaaagaattta 43310565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 632
Target Start/End: Original strand, 50524321 - 50524365
Alignment:
Q  588 taaacaatttgagtaacaaattcacacaatttccaatacataatt 632  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  50524321 taaacaatttgagtaataaattaacacaatttccaatacataatt 50524365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 595 - 686
Target Start/End: Complemental strand, 43310429 - 43310338
Alignment:
Q  595 tttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccct 686  Q
    |||||| || ||||| ||||||||||||||||| |||| |||| |||   |||||||| || || |||||||||||||||||  ||||||||    
T  43310429 tttgagcaataaattaacacaatttccaatacaaaatttctattagtagaattcttaacatgtgctctaaaggcacaagttagcatttccct 43310338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 564
Target Start/End: Original strand, 52915456 - 52915518
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattt 564  Q
    ||||||||||||  ||| | ||||||||||||||||||  |||| ||||||||||||||||||    
T  52915456 gttaacttgtgctcttatgacacatgttaagcattaatgtcatttcattagtggtaagaattt 52915518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 687
Target Start/End: Original strand, 28451800 - 28451897
Alignment:
Q  590 aacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 687  Q
    |||| ||||| ||| ||||| ||||||||||||||| ||||||  ||| ||||  |||||||| || ||  |||| |||||||||||| |||||||||    
T  28451800 aacattttgaataataaattaacacaatttccaatatataatttttattagtggaattcttaacatgtgccctaagggcacaagttaacatttccctt 28451897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 38773685 - 38773649
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaa 538  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38773685 gttaacttgtgcccttagggcacatgttaagcattaa 38773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 538
Target Start/End: Original strand, 51980692 - 51980728
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaa 538  Q
    ||||||||||||| |||||||||||||||||||||||    
T  51980692 gttaacttgtgcccttagggcacatgttaagcattaa 51980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 35982433 - 35982370
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||||  ||| ||||||| ||||||||||||| ||||||| || || ||||||||||    
T  35982433 gttaacttgtgcatttacggcacatattaagcattaatttcattccactaatgttaagaattta 35982370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 52378748 - 52378685
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||||| |||||||||||||||| ||||||||  ||| | ||| |||| ||||||||    
T  52378748 gttaacttgtgcctttagggcacatgttaaacattaattttatttctttaatggtgagaattta 52378685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 4565705 - 4565659
Alignment:
Q  15 aatatacaacaaattgaatcgatgataaaa-tgcaatcaacatgatt 60  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  4565705 aatatacaacaaattgaatctatgataaaattgcaatcaagatgatt 4565659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 638
Target Start/End: Original strand, 8702079 - 8702129
Alignment:
Q  588 taaacaatttgagtaacaaattcacacaatttccaatacataattactatc 638  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||| |||||||    
T  8702079 taaataatttgagtaataaattaacacaattttcaatacataaatactatc 8702129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 638
Target Start/End: Original strand, 9053966 - 9054016
Alignment:
Q  588 taaacaatttgagtaacaaattcacacaatttccaatacataattactatc 638  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||| |||||||    
T  9053966 taaataatttgagtaataaattaacacaattttcaatacataaatactatc 9054016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 565
Target Start/End: Complemental strand, 46749042 - 46748980
Alignment:
Q  503 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||||  ||| |||||||||||| ||||||  ||||| ||||| ||||||||||||    
T  46749042 ttaacttgtgcctatagagcacatgttaagtattaatatcattctattagcggtaagaattta 46748980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 502 - 684
Target Start/End: Complemental strand, 14776447 - 14776270
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||| | ||||| |||||||||| |||||||| |||| ||||| |||||||||||| |||            |||||||||||||||||||||    
T  14776447 gttaacttgtgtccttaggacacatgttaaacattaatttcatttcattaatggtaagaatttgatg-----aaaaaaattaatattaaacaatttgagt 14776353  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcc 684  Q
    || ||||| ||||||||| ||||||||||||||||  | | | |||||||| || || ||||| |||||||||||| ||||||    
T  14776352 aataaattaacacaattttcaatacataattactaatattaaaattcttaacatgtgctctaatggcacaagttaacatttcc 14776270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 581 - 689
Target Start/End: Complemental strand, 9374129 - 9374021
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    ||||||||||||| |||||| || ||||| | |||||||||||||||||||| || | | ||| ||| |||| || || |||||||||| ||||||||||    
T  9374129 ttaatattaaacattttgagcaataaattaaaacaatttccaatacataatttctgttaatgaaatttttaacatgtgctctaaaggcataagttaatat 9374030  T
Q  681 ttccctttt 689  Q
    ||| |||||    
T  9374029 ttctctttt 9374021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 652
Target Start/End: Complemental strand, 40534394 - 40534250
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||  |||||||||||||||| |||||||| ||| |||||| | |||||||||||||||           ||| |||||||||| ||||||    
T  40534394 gttaacttgtgctcttagggcacatgttaaacattaatttcataccattaatagtaagaatttaatgg------aaaaattagtattaaacaacttgagt 40534301  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaa 652  Q
    || ||||| ||||||||| ||||||| |||||| || ||||  ||||||||    
T  40534300 aataaattaacacaattttcaatacacaattacgattagtggaattcttaa 40534250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 10500483 - 10500420
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||    
T  10500483 gttaacttgtgccgttaaggcacatgttaagcattaatgtaattccattaatggtaagaattta 10500420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 686
Target Start/End: Complemental strand, 32227612 - 32227431
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||| ||||||  ||||||||||||||||||||||||| |||||||||| |||||| |||||||||            ||||||||||||| ||| |      
T  32227612 gttaatttgtgcttttagggcacatgttaagcattaatttcattccattaatggtaataatttaatg---aaaaaaaaattaatattaaacattttaaac 32227516  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccct 686  Q
    || ||||  ||||||||| |||||||||||| |||| |||   |||||||| |||||  |||| |||||| ||||| ||||||||    
T  32227515 aataaatgaacacaattttcaatacataatttctattagtagaattcttaacatatgccctaagggcacatgttaacatttccct 32227431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 657
Target Start/End: Original strand, 30326106 - 30326182
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatat 657  Q
    ||||||||||||| ||||||||| ||||| ||||||||| |||||||||||| || | | ||| |||||||| ||||    
T  30326106 ttaatattaaacattttgagtaataaattaacacaattttcaatacataatttctcttaatgaaattcttaacatat 30326182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 687
Target Start/End: Original strand, 35327751 - 35327931
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    |||||| |||||| | |||| ||||||||| |||||||| |||| ||||| |  ||||||||||||||           ||| |||||||||| ||||||    
T  35327751 gttaacatgtgccctcagggtacatgttaaacattaatttcatttcattaatattaagaatttaatggaaaaaaa----ttagtattaaacaacttgagt 35327846  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 687  Q
    || ||||| ||||| ||| ||||||| ||||||||| ||||  |||||||  || |||  ||| |||||||||||| |||||||||    
T  35327847 aataaattaacacagttttcaatacacaattactattagtggaattcttac-atgtgtcttaagggcacaagttaacatttccctt 35327931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 27414051 - 27414108
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaag 559  Q
    ||||||||||||| ||||||||||||||||||||||| | | | |||||| |||||||    
T  27414051 gttaacttgtgcccttagggcacatgttaagcattaaattcttgccattaatggtaag 27414108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 682
Target Start/End: Original strand, 33830302 - 33830395
Alignment:
Q  589 aaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 682  Q
    ||||| |||||| || ||||| |||||||||||||||||||||| |||| ||| | |||||||| ||||  | ||| |||| ||||||| ||||    
T  33830302 aaacattttgagcaataaattaacacaatttccaatacataatttctattagtaaaattcttaacatatactataagggcataagttaacattt 33830395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 567
Target Start/End: Complemental strand, 43305653 - 43305604
Alignment:
Q  518 agggcacatgttaagcattaattgcattccattagtggtaagaatttaat 567  Q
    |||||| |||||||||||||||| |||||||||| |||||| ||||||||    
T  43305653 agggcatatgttaagcattaatttcattccattaatggtaataatttaat 43305604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 538
Target Start/End: Original strand, 44721342 - 44721387
Alignment:
Q  493 atgggtcccgttaacttgtgccgttagggcacatgttaagcattaa 538  Q
    |||||||  ||||||||||||| |||| ||||||||||||||||||    
T  44721342 atgggtcatgttaacttgtgcccttagagcacatgttaagcattaa 44721387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 502 - 687
Target Start/End: Original strand, 38073572 - 38073752
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||            |||||| |||| | ||||||     
T  38073572 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatg-----aaataaattaatactaaatattttgagc 38073666  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 687  Q
    || ||||| |||||||||| ||||||||||| |||| || || || ||||| || ||  |||| |||||||||||| |||||||||    
T  38073667 aataaattaacacaatttctaatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacatttccctt 38073752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 502 - 652
Target Start/End: Original strand, 20884456 - 20884604
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||           ||| |||||||||||||||||    
T  20884456 gttaacttgtgcccttagggtacatgttaagcattaatttcatttcattaatagtaagaatttaatgg---gaaaaaaattagtattaaacaatttgagt 20884552  T
Q  602 -aacaaattcacacaatttccaatacataattactatcagtgagattcttaa 652  Q
     || ||||| ||||||||||||||| | ||||||||| ||||  ||||||||    
T  20884553 aaataaattaacacaatttccaatatacaattactattagtggaattcttaa 20884604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 39854086 - 39854151
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 567  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||| ||||||||    
T  39854086 gttaacttgtgcccttagggcatatgttaagcattaatttcattccattaatggtaaaaatttaat 39854151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 565
Target Start/End: Original strand, 38652637 - 38652700
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||||| |||||| ||||||||| |||||||  ||||||||||||||||||||||||    
T  38652637 gttaacttgtgcccttagggtacatgttaaacattaatgtcattccattagtggtaagaattta 38652700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 565
Target Start/End: Original strand, 45513091 - 45513154
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||||| ||| | ||||||||||||| ||||| |||||||||| |||||||||||||    
T  45513091 gttaacttgtgcccttaagacacatgttaagcactaatttcattccattaatggtaagaattta 45513154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 504 - 565
Target Start/End: Original strand, 8073536 - 8073597
Alignment:
Q  504 taacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    ||||||||||| || |||||||||||||||||||||  ||||||| || |||||||||||||    
T  8073536 taacttgtgcctttggggcacatgttaagcattaatgtcattccactaatggtaagaattta 8073597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 583 - 632
Target Start/End: Complemental strand, 11667095 - 11667046
Alignment:
Q  583 aatattaaacaatttgagtaacaaattcacacaatttccaatacataatt 632  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  11667095 aatattaaacaatttgagcaataaattaacacaatttccaatacataatt 11667046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 581 - 683
Target Start/End: Complemental strand, 21148491 - 21148389
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    ||||||||||||| ||||||||| ||||| | ||||||| ||||||||||||  ||| ||||  |||||||| || |||  |||| |||||| |||| ||    
T  21148491 ttaatattaaacattttgagtaataaattaatacaattttcaatacataatttttattagtggaattcttaacatgtgtcttaaaagcacaacttaacat 21148392  T
Q  681 ttc 683  Q
    |||    
T  21148391 ttc 21148389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 11667157 - 11667120
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaat 539  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11667157 gttaacttgtgcccttagggcacatgttaagcattaat 11667120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 536
Target Start/End: Complemental strand, 38073743 - 38073709
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcatt 536  Q
    ||||||||||||| |||||||||||||||||||||    
T  38073743 gttaacttgtgcccttagggcacatgttaagcatt 38073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 682
Target Start/End: Original strand, 38652729 - 38652806
Alignment:
Q  605 aaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatattt 682  Q
    ||||| ||||| |||||||||||||||| |||| ||||  |||||||| || ||  ||||| ||||||||||| ||||    
T  38652729 aaattaacacactttccaatacataatttctattagtggaattcttaacatgtgccctaaaagcacaagttaacattt 38652806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 502 - 687
Target Start/End: Original strand, 22409329 - 22409509
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| |||  ||||||||||| |||||||| |||||||||| ||||||||||||||||            ||||||||||||| ||| ||     
T  22409329 gttaacttgtgcccttaatgcacatgttaaacattaatttcattccattaatggtaagaatttaatg-----aaaaaaattaatattaaacattttaagc 22409423  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 687  Q
    || ||||| |||||||||||||||||| ||| |||| |||   |||||||| || ||  |||| |||||||||||| |||||||||    
T  22409424 aataaattaacacaatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacatttccctt 22409509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 501 - 688
Target Start/End: Complemental strand, 32318691 - 32318510
Alignment:
Q  501 cgttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgag 600  Q
    |||||||||||||| ||||||||||||||||||||||||  |||| |||||||| ||| |||||| ||            ||||||||||||| |||||     
T  32318691 cgttaacttgtgcccttagggcacatgttaagcattaatgtcatttcattagtgttaataatttattg-----aaaaaaattaatattaaacattttgaa 32318597  T
Q  601 taacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 688  Q
     || ||||| ||||||||| |||||||||||| |||| | ||| |||||||| || ||  |||| |||||||||||| ||||||||||    
T  32318596 caataaattaacacaattttcaatacataatttctattaatgaaattcttaacatgtg-gctaagggcacaagttaacatttcccttt 32318510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 502 - 633
Target Start/End: Original strand, 20574856 - 20574985
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||  | |||||||||||||||           ||| |||||||||| ||||||    
T  20574856 gttaacttgtgcccttagggcacatgttaaacattaatttcattccattgatagtaagaatttaatgg--aaaaaaaaattagtattaaacaacttgagt 20574953  T
Q  602 aacaaattcacacaatttccaatacataatta 633  Q
    || ||||| ||||||||||||||||| |||||    
T  20574954 aataaattaacacaatttccaatacacaatta 20574985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 688
Target Start/End: Original strand, 30537925 - 30538107
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    |||||||||| || |||||||||||||||| ||||| || ||||||| || |||||||||||||||||           | ||||||||||| ||||||     
T  30537925 gttaacttgttcccttagggcacatgttaaacattagtttcattccaataatggtaagaatttaatgg----aaaaaaatgaatattaaacattttgagc 30538020  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttcccttt 688  Q
    || ||||| ||||||||| |||||||||||| |||| | ||  |||||||| || | |||||| || |||| |||| ||||||||||    
T  30538021 aataaattaacacaattttcaatacataatttctattaatggaattcttaacatgtattctaagggtacaaattaacatttcccttt 30538107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 38794171 - 38794104
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatgg 569  Q
    ||||||||||||| ||||||| ||||||||||||||||| |||||||||| | |||||||||||||||    
T  38794171 gttaacttgtgcccttagggcccatgttaagcattaatttcattccattaatagtaagaatttaatgg 38794104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 581 - 686
Target Start/End: Complemental strand, 10109320 - 10109215
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    ||||||||||||| |||||| || ||||| ||||||||| |||||||||||| |||| ||||  ||||||||||| ||  |||| | |||||||||| ||    
T  10109320 ttaatattaaacattttgagcaataaattaacacaattttcaatacataatttctattagtggaattcttaatatgtgccctaaggacacaagttaacat 10109221  T
Q  681 ttccct 686  Q
    ||||||    
T  10109220 ttccct 10109215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 585 - 652
Target Start/End: Original strand, 14958401 - 14958468
Alignment:
Q  585 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 652  Q
    |||||||||| |||||||| ||||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  14958401 tattaaacaagttgagtaataaattcacacaattttcaatacatgattactattagtgaaattcttaa 14958468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 53039379 - 53039444
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 567  Q
    ||||||||||| | |||||||| |||||||||||||||| |||| ||||| |||||| ||||||||    
T  53039379 gttaacttgtgtccttagggcatatgttaagcattaatttcatttcattaatggtaaaaatttaat 53039444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 503 - 558
Target Start/End: Original strand, 4960354 - 4960409
Alignment:
Q  503 ttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaa 558  Q
    ||||||| |||| ||||| ||||||||||||||||||| |||||||||| ||||||    
T  4960354 ttaacttatgcccttaggacacatgttaagcattaatttcattccattaatggtaa 4960409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 683
Target Start/End: Complemental strand, 38793819 - 38793721
Alignment:
Q  585 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttc 683  Q
    |||||||||| || || || ||||| ||||||||| ||||||| ||||||||| ||||  |||||||| ||  || |||| |||||||||||| |||||    
T  38793819 tattaaacaacttaagcaataaattaacacaatttacaatacacaattactattagtggaattcttaacatgagtcctaagggcacaagttaacatttc 38793721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 642
Target Start/End: Original strand, 4960430 - 4960489
Alignment:
Q  583 aatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtg 642  Q
    |||||||||||||||||| || ||||| ||||||||| |||||| ||||| |||| ||||    
T  4960430 aatattaaacaatttgagcaataaattaacacaattttcaatacgtaatttctattagtg 4960489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 30255186 - 30255255
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattcc---attagtggtaagaatttaatg 568  Q
    ||||||||||||| ||||||||||| |||| |||||||| ||||||   | || ||||||||||||||||    
T  30255186 gttaacttgtgcccttagggcacattttaaacattaatttcattccaataataatggtaagaatttaatg 30255255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 536
Target Start/End: Original strand, 17268776 - 17268810
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcatt 536  Q
    ||||||||||||| |||||||||||||||||||||    
T  17268776 gttaacttgtgcctttagggcacatgttaagcatt 17268810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 565
Target Start/End: Original strand, 14136576 - 14136625
Alignment:
Q  516 ttagggcacatgttaagcattaattgcattccattagtggtaagaattta 565  Q
    |||||||||||||||| |||||||   ||||||||| |||||||||||||    
T  14136576 ttagggcacatgttaaacattaatattattccattattggtaagaattta 14136625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 581 - 688
Target Start/End: Original strand, 36406 - 36513
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    ||||||||||| | |||||| || ||||| |||||||||||||||||||||| |||| ||||  |||||||| || || | ||| |||||||||||| ||    
T  36406 ttaatattaaatattttgagaaataaattaacacaatttccaatacataatttctattagtggaattcttaacatgtgctttaagggcacaagttaacat 36505  T
Q  681 ttcccttt 688  Q
    ||||||||    
T  36506 ttcccttt 36513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 581 - 682
Target Start/End: Complemental strand, 21334 - 21233
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatat 680  Q
    ||||||||||||| ||||| ||| ||||| ||||||||||||||| ||||||  ||| | ||  |||||||| || ||| ||||||||||||||||| ||    
T  21334 ttaatattaaacattttgaataataaattaacacaatttccaatatataatttttattattggaattcttaacatgtgtcctaaaggcacaagttaacat 21235  T
Q  681 tt 682  Q
    ||    
T  21234 tt 21233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 33972591 - 33972652
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatt 563  Q
    ||||||||||||  |||| |||||||||||||||||||| |||||||||| |||||||||||    
T  33972591 gttaacttgtgctcttagagcacatgttaagcattaatttcattccattaatggtaagaatt 33972652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 551
Target Start/End: Original strand, 3213646 - 3213695
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccatta 551  Q
    ||||||| ||| | |||||||||||||||| |||||||| ||||||||||    
T  3213646 gttaactcgtgtctttagggcacatgttaaacattaatttcattccatta 3213695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 12141692 - 12141757
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaat 567  Q
    ||||||||||||  ||| | |||||||||| |||||||| |||||||||| || ||| ||||||||    
T  12141692 gttaacttgtgcatttaagacacatgttaaacattaatttcattccattaatgataaaaatttaat 12141757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 502 - 687
Target Start/End: Original strand, 260294 - 260474
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatggnnnnnnnnnnnttaatattaaacaatttgagt 601  Q
    ||||||||||||| ||||||  ||||||||||||||||  |||||||||| ||||||||||||| ||            |||| |||||||| |||||      
T  260294 gttaacttgtgcccttagggtccatgttaagcattaatgtcattccattaatggtaagaatttattg-----aaaaaaattaacattaaacattttgaac 260388  T
Q  602 aacaaattcacacaatttccaatacataattactatcagtgagattcttaatatatgttctaaaggcacaagttaatatttccctt 687  Q
    || ||||| |||||| || |||||||||||| |||| ||||  ||||||||||| ||  || | |||||||||||  |||||||||    
T  260389 aataaattaacacaaatttcaatacataatttctattagtggtattcttaatatgtgcccttagggcacaagttatcatttccctt 260474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 652
Target Start/End: Complemental strand, 25837009 - 25836942
Alignment:
Q  585 tattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 652  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||||| ||| ||||  ||||||||    
T  25837009 tattaaacaatttgagtaataaatgaacacactttccaatacataattattattagtggaattcttaa 25836942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 25837496 - 25837429
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatgg 569  Q
    |||||||| |||| ||| | ||||||||||||||||||| ||||  |||| |||||||||||||||||    
T  25837496 gttaacttatgcccttaagacacatgttaagcattaatttcattatattaatggtaagaatttaatgg 25837429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 568
Target Start/End: Complemental strand, 21369269 - 21369224
Alignment:
Q  523 acatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||    
T  21369269 acatgttaaacattaatttcattccattaatggtaagaatttaatg 21369224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 652
Target Start/End: Original strand, 10044224 - 10044295
Alignment:
Q  581 ttaatattaaacaatttgagtaacaaattcacacaatttccaatacataattactatcagtgagattcttaa 652  Q
    ||||||||||||| |||||| || ||||| |||||| || |||||||||||| |||| | ||| ||||||||    
T  10044224 ttaatattaaacattttgagcaataaattaacacaactttcaatacataatttctattaatgacattcttaa 10044295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 28085353 - 28085307
Alignment:
Q  492 aatgggtcccgttaacttgtgccgttagggcacatgttaagcattaa 538  Q
    ||||||||  ||||||||||||  |||||||||||||||||||||||    
T  28085353 aatgggtcatgttaacttgtgctcttagggcacatgttaagcattaa 28085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 637
Target Start/End: Original strand, 5402771 - 5402824
Alignment:
Q  585 tattaaacaatttga-gtaacaaattcacacaatttccaatacataattactat 637  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||| |||||||||    
T  5402771 tattaaacaacttgaagtaataaattaacacaatttccaatacacaattactat 5402824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 9076 - 9142
Alignment:
Q  502 gttaacttgtgccgttagggcacatgttaagcattaattgcattccattagtggtaagaatttaatg 568  Q
    |||||||||| || ||||| |||||||||||||||||||  |||||| || ||| || |||||||||    
T  9076 gttaacttgttcccttaggacacatgttaagcattaattttattccactaatggcaataatttaatg 9142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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