View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_20 (Length: 421)
Name: NF1121_low_20
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 70 - 392
Target Start/End: Original strand, 11224626 - 11224948
Alignment:
| Q |
70 |
agtgagatgaataccgaaaatcgtaagaagcttaaactcccacatgctggtggtagtaggagcaacgcaagaaggggtcgtctaatggtaagcagattca |
169 |
Q |
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| T |
11224626 |
agtgagaagaataccgaaaatcgtaagaagcttaaagtcccacatgctggtggtagtaggagcaacgcaagaaggggtcgtctaatggtaagcagattca |
11224725 |
T |
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| Q |
170 |
aaatatttatgtatcccaacagagctgttattgatgagttcttaatttacattttatttatgatgttaggaacaacaattaggaaggcctgtatgtcgaa |
269 |
Q |
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| T |
11224726 |
aaatatttatgtatcccaacaaagctgttattgatgagttcttaatttacattttatttatgatgttaggaacaacaattaggaaggcctgtatgtcgaa |
11224825 |
T |
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| Q |
270 |
gcgaggttattttgtcaactttaataaagaatgatggaaattatgtgaacgaagaaggaaaagctatagctgtaagtatacttttgggtgtgttaagttc |
369 |
Q |
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| T |
11224826 |
gcgaggttattttgtcaactttaataaagaatgatggaaattatgtgaacgaagaaggaaaagcaatagttgtaagtatacttttgggtgtgttaagttg |
11224925 |
T |
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| Q |
370 |
attaaatgttgtgcatgtagtat |
392 |
Q |
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| T |
11224926 |
attaaatgttgtgcatgtagtat |
11224948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 11225433 - 11225489
Alignment:
| Q |
334 |
tatagctgtaagtatacttttgggtgtgttaagttcattaaatgttgtgcatgtagta |
391 |
Q |
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| T |
11225433 |
tatagctgtaagtatacttttgggtgtgtt-ggttgattaaatgttgtgcatgtagta |
11225489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 11225243 - 11225295
Alignment:
| Q |
335 |
atagctgtaagtatacttttgggtgtgttaagttcattaaatgttgtgcatgta |
388 |
Q |
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| T |
11225243 |
atagctgtaaatatacttttgggtgtgttga-ttgattaaatgttatgcatgta |
11225295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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