View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_22 (Length: 414)
Name: NF1121_low_22
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 79 - 386
Target Start/End: Original strand, 38224915 - 38225222
Alignment:
| Q |
79 |
aatataatataggttggaaaacaaggccgacaatgcatcaaactatactattctgtcacgggacggctatctggttgaagaagacattcttcatatcagg |
178 |
Q |
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| T |
38224915 |
aatataatataggttggaaaacaaggccgacaatgcatcaaactatactattctgtcacgggacggctatctggttgaagaagacattcttcatatcagg |
38225014 |
T |
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| Q |
179 |
ctatcacactagccatttgaatttatattaattaattaattaaattctcaaacaatttttgctacaagtgtaattaaaatcagacaatactacgattttt |
278 |
Q |
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| T |
38225015 |
ctatcacactagccacttgaatttatattaattaattaattaaattctcaaacaatttttgctacaagtgtaattaaaatcagacaatactacgattttt |
38225114 |
T |
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| Q |
279 |
aggaaaccaattatgcatgcaaagtgtgttatagagaccaagccaagccacacccgtttcaaaaataagctgcagttggcaagttcgtctcaaatgtttg |
378 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38225115 |
aggaaaccaattatgcatgcaaagtctgttatagagaccaagccaagccacacccgtttcaaaaataagctgcacttggcaagttcgtctcaaatgtttg |
38225214 |
T |
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| Q |
379 |
aagcaact |
386 |
Q |
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|||||||| |
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| T |
38225215 |
aagcaact |
38225222 |
T |
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