View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_29 (Length: 338)
Name: NF1121_low_29
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 309
Target Start/End: Original strand, 36453388 - 36453693
Alignment:
| Q |
4 |
gtgttgtagctgcgacacgaattcagcttgtgtcgcgtttatgtgatatcaggaagcttcagttcgtttgatcgtagaccattagagaggccaacgacgg |
103 |
Q |
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| T |
36453388 |
gtgttgtagctgcgacacgaattcagcttgtgtcgcgtttatgtgatatcgggaagctttagttcgtttgatcgaagaccattagagaggccaatgacgg |
36453487 |
T |
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| Q |
104 |
agttacaacatgctgcttcaacaagtactcaacaagtggtggcagagctcaatggatcaaatttgtatgcaacttctcgagggatagagagagaccatga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
36453488 |
agttacaacatgctgcttcaacaagtactcaacaagtggtggcagagctcaatggatcaaactcgtatgcaacttctcgagggatagagagagaccatga |
36453587 |
T |
|
| Q |
204 |
tgcttctcttaatattggagggtcaagtggcacaaattggaatgatgtaccaaataatggggtcgatgaacctgaacctatttgggaatgggaacaacta |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36453588 |
tgcttctcttaatattggagggtcaagtggcacaaattggaatgatgtaccaaataatggggttgatgaacctgaacctatttgggaatgggaacaacta |
36453687 |
T |
|
| Q |
304 |
aattgg |
309 |
Q |
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|||||| |
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| T |
36453688 |
aattgg |
36453693 |
T |
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