View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1121_low_36 (Length: 306)

Name: NF1121_low_36
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1121_low_36
NF1121_low_36
[»] chr1 (2 HSPs)
chr1 (12-188)||(6942976-6943150)
chr1 (177-213)||(26240113-26240150)
[»] chr8 (3 HSPs)
chr8 (170-213)||(42094756-42094800)
chr8 (176-213)||(42094007-42094045)
chr8 (177-213)||(22632980-22633017)
[»] chr4 (2 HSPs)
chr4 (176-213)||(14527588-14527626)
chr4 (178-213)||(24666129-24666165)
[»] chr3 (2 HSPs)
chr3 (178-213)||(47571196-47571232)
chr3 (178-213)||(49349676-49349712)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 6943150 - 6942976
Alignment:
Q  12 gagagaagaacgatgggtttcaaagattttaattagcgggaataattggagagaatgattatataccgcgtttgttttatggttggaaagtaacttttta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  6943150 gagagaagaacgatgggtttcaaagattttaattagcgggaataattggagagaatgattata--ccgcgtttgttttatggttggaaagtaacttttta 6943053  T
Q  112 tggatttataaggaggtgataattatcgataatgtccattcccatcaaattttatatattttttaaggtggattcta 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943052 tggatttataaggaggtgataattatcgataatgtccattcccatcaaattttatatattttttaaggtggattcta 6942976  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 26240113 - 26240150
Alignment:
Q  177 aggtggattctagggt-agggatcaattaagtccctca 213  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctca 26240150  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 42094800 - 42094756
Alignment:
Q  170 ttttttaaggtggattctagggt-agggatcaattaagtccctca 213  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  42094800 ttttttaaggtgaattctagggtgagggatcaattaagtccctca 42094756  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 42094007 - 42094045
Alignment:
Q  176 aaggtggattctagggt-agggatcaattaagtccctca 213  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  42094007 aaggtggattctagggtgagggatcaattaagtccctca 42094045  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 22633017 - 22632980
Alignment:
Q  177 aggtggattctagggt-agggatcaattaagtccctca 213  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctca 22632980  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 14527626 - 14527588
Alignment:
Q  176 aaggtggattctagggt-agggatcaattaagtccctca 213  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctca 14527588  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 24666129 - 24666165
Alignment:
Q  178 ggtggattctagggt-agggatcaattaagtccctca 213  Q
    ||||||||||||||| |||||||||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctca 24666165  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 47571196 - 47571232
Alignment:
Q  178 ggtggattctagggt-agggatcaattaagtccctca 213  Q
    ||||||||||||||| |||||||||||||||||||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctca 47571232  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 49349676 - 49349712
Alignment:
Q  178 ggtggattctagggt-agggatcaattaagtccctca 213  Q
    ||||||||||||||| |||||||||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctca 49349712  T

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