View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_39 (Length: 276)
Name: NF1121_low_39
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_39 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 50 - 276
Target Start/End: Original strand, 6219039 - 6219265
Alignment:
| Q |
50 |
taagcttatcacacttcagctcacaatcctagggtttcttgaaaatttagggtgttacaactttcatatcccgtttggcataagaacaatgaattattaa |
149 |
Q |
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| T |
6219039 |
taagcttatcacacgtcagctcacaatcctagggtttcttgaaaatttagggtgttacaactttcatatcccttttggcatatgaacaatgaattattaa |
6219138 |
T |
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| Q |
150 |
aagaactaatcggagaacttcgtaatgtcccttttggcatatagttagatataatgtgagttttgcatcgctgttatgaacatcaaccatcggaaaaata |
249 |
Q |
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| T |
6219139 |
aagaactaatcggagaacttagtaatgtcccttttggcatatagttagatataatgtgagttttgcatcgctgttatgaacatcaaccatcggaaaaata |
6219238 |
T |
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| Q |
250 |
ttgttggtgtaagtcttataggtcaat |
276 |
Q |
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| T |
6219239 |
ttgttggtgtaagtcttataggtcaat |
6219265 |
T |
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