View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_4 (Length: 597)
Name: NF1121_low_4
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 323 - 568
Target Start/End: Original strand, 26326855 - 26327106
Alignment:
| Q |
323 |
gcgggcctgggttaaaatagtttctaaatttttcaaatt-ggcaaatacactcttgaacttgtattgcatcaatcaagattatctcttatctctattata |
421 |
Q |
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| T |
26326855 |
gcgggcctgggttaaaatagtttctaaatttttcaaatttggcaaatacactcttgaacttgtattgcatcaatcaagattatctcttatctctattata |
26326954 |
T |
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| Q |
422 |
actgatatagttgag-----aatgtattctctcaannnnnnnctcatgtttttcaatctcaacccttaaaaacctctttttccaagattctctttatcga |
516 |
Q |
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| T |
26326955 |
actgatatagttgagttgagaatgtattctctcaatttttttctcatgtttttcaatctcaacccttaaaaacctctttttccaagattctctttatcga |
26327054 |
T |
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| Q |
517 |
tggatggtggggatttcaatggatcctcatgtcacacgagaagatcaattcc |
568 |
Q |
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| T |
26327055 |
tggatggtggggatttcaatggatcctcgtgtaacacgagaagatcaattcc |
26327106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 26326539 - 26326792
Alignment:
| Q |
11 |
caaaggtaagatactgttgtttaaagaatgtaatatgaagttattaaattagtaatagaagtggtagtcctgttccctaaacagcaaggc---------- |
100 |
Q |
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| T |
26326539 |
caaaggtaagatactgttgtttaaagaatgtaatatgaagttattaaattagtaatagaagtggtagtcatgttccctaaacagcaaggcaaaagtactt |
26326638 |
T |
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| Q |
101 |
atacgagttaaaacatacaaaacgatctagtttactatgtaacttccatcaagacaaaagtacnnnnnnnnnnnnnnnnnaaattaaagttttcacatga |
200 |
Q |
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| T |
26326639 |
atacgagttaaaacatacaaaacgatctagtttactatgtaacttccatcaagacaaaagtac-ttttttgctattttttaaattaaagttttcacatga |
26326737 |
T |
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| Q |
201 |
ttaagatgctatcttttgtggagacaaagttaaaacagcaattatgaataatata |
255 |
Q |
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| T |
26326738 |
ttaagatgctatcttttgtggagacaaagttaaaacaacaattatgaataatata |
26326792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 568
Target Start/End: Complemental strand, 32254370 - 32254320
Alignment:
| Q |
518 |
ggatggtggggatttcaatggatcctcatgtcacacgagaagatcaattcc |
568 |
Q |
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| T |
32254370 |
ggatgatggagatttcaatggatcctcatgtcacatgagaggatccattcc |
32254320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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