View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1121_low_45 (Length: 251)

Name: NF1121_low_45
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1121_low_45
NF1121_low_45
[»] chr8 (8 HSPs)
chr8 (4-251)||(11996542-11996789)
chr8 (4-172)||(12008562-12008730)
chr8 (4-160)||(11987921-11988077)
chr8 (21-134)||(12013062-12013175)
chr8 (16-156)||(12003126-12003266)
chr8 (16-134)||(11973155-11973273)
chr8 (16-160)||(11983230-11983374)
chr8 (16-134)||(11978951-11979069)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 11996789 - 11996542
Alignment:
Q  4 gcagcaacacagacatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattat 103  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11996789 gcagtaacacaaacatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattat 11996690  T
Q  104 ctgattcaccaagagtggtcaatgtatcatcatttttgggcaagatagaggtaagctaataagtacatttatgatctatttttaaagttttgattgagcc 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11996689 ctgattcaccaagagtagtcaatgtatcatcatttttgggcaagatagaggtaagctaataagtacatttatgatctacttttaaagttttgattgagcc 11996590  T
Q  204 taacttgtaattttttaaattttctaagcttgcttgtatttagtttac 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11996589 taacttgtaattttttaaattttctaagcttgcttgtatttagtttac 11996542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 12008730 - 12008562
Alignment:
Q  4 gcagcaacacagacatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattat 103  Q
    |||| |||||| | || |||||||||||||||||||||||||||||||||| |||| || |||||| ||||||| ||||||||||||||||| || ||||    
T  12008730 gcagtaacacaaaaatttgagtcagctaaagaatgcattcaaataaattatcatggagctaaaagaacatttgagtaccttcttcccctcctccagttat 12008631  T
Q  104 ctgattcaccaagagtggtcaatgtatcatcatttttgggcaagatagaggtaagctaataagtacatt 172  Q
    | ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12008630 cggattcaccacgagtagtcaatgtatcatcatttttgggcaagatagaggtaagctaatatgtacatt 12008562  T

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Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 11988077 - 11987921
Alignment:
Q  4 gcagcaacacagacatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattat 103  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |||    
T  11988077 gcagtaacacaaacatatgagtcagctaaagaatgcatccaaataaattattatggggctaagagaacatttgaataccttcttcccctccttcaactat 11987978  T
Q  104 ctgattcaccaagagtggtcaatgtatcatcatttttgggcaagatagaggtaagct 160  Q
    |||||||||||||||| ||||||||||||||      ||||||||||||||||||||    
T  11987977 ctgattcaccaagagtagtcaatgtatcatctggagcgggcaagatagaggtaagct 11987921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 12013175 - 12013062
Alignment:
Q  21 tgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattatctgattcaccaagagtg 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||     
T  12013175 tgagtcagctaaagaatgcattcaaataaattattatggggctaaaagaacatttgaataccttcttcctctccttcaattatctgattcaccaagagta 12013076  T
Q  121 gtcaatgtatcatc 134  Q
    ||||||||||||||    
T  12013075 gtcaatgtatcatc 12013062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 12003266 - 12003126
Alignment:
Q  16 acatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattatctgattcaccaa 115  Q
    |||| |||||||||||||||||||||  |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12003266 acatttgagtcagctaaagaatgcatagaaataaattattatggagctaaaagaacatttgaataccttcttcccctccttcaattatctgattcaccaa 12003167  T
Q  116 gagtggtcaatgtatcatcatttttgggcaagatagaggta 156  Q
     ||| |||||||||||||||   ||||||||||||||||||    
T  12003166 aagtagtcaatgtatcatcaggattgggcaagatagaggta 12003126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 11973273 - 11973155
Alignment:
Q  16 acatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattatctgattcaccaa 115  Q
    |||||||||| |||| |||||||| | |||| |||||||||||| ||||||| | |   |||||  ||||| ||||||||||| ||||||||||||||||    
T  11973273 acatatgagttagctgaagaatgcttgcaaacaaattattatggagcaaaaataactactgaatcacttctacccctccttcagttatctgattcaccaa 11973174  T
Q  116 gagtggtcaatgtatcatc 134  Q
    || | || |||||||||||    
T  11973173 gaattgtgaatgtatcatc 11973155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 11983374 - 11983230
Alignment:
Q  16 acatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattatctgattcaccaa 115  Q
    |||||||||| |||| |||||||| | ||||||||||||||||| || |||| | |   |||||  ||||| || |||||  | ||||||||||||||||    
T  11983374 acatatgagttagctgaagaatgcttgcaaataaattattatggtgctaaaataactactgaatctcttctacctctcctaaagttatctgattcaccaa 11983275  T
Q  116 gagtggtcaatgtatcatcatttttgggcaagatagaggtaagct 160  Q
    || | || |||||||||||   |||||| ||| ||||||||||||    
T  11983274 gaattgtgaatgtatcatccactttgggaaagttagaggtaagct 11983230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 11979069 - 11978951
Alignment:
Q  16 acatatgagtcagctaaagaatgcattcaaataaattattatggggcaaaaagagcatttgaataccttcttcccctccttcaattatctgattcaccaa 115  Q
    |||||||||| |||| |||||||  | ||||||||||||||||| || |||| | |   |||||  ||||| ||||||||  | ||||||||||||||||    
T  11979069 acatatgagttagctgaagaatgtttgcaaataaattattatggtgctaaaataaccactgaatcacttctgcccctcctaaagttatctgattcaccaa 11978970  T
Q  116 gagtggtcaatgtatcatc 134  Q
    |  | || |||||||||||    
T  11978969 ggattgtgaatgtatcatc 11978951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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