View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_47 (Length: 251)
Name: NF1121_low_47
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 1325684 - 1325453
Alignment:
| Q |
11 |
gcataatctatgcttagaaagaatatgacaatacatcaagcaggtgtaaatttttagtatgagagtatttaaacaaagaggggataaaggatgaaaattg |
110 |
Q |
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| T |
1325684 |
gcataatctatgcttagaaagaatatgacaatacatcaagcaggtgtaaatttttagtatgagagtatttaaacaaagaggggataaaggatgaaaattg |
1325585 |
T |
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| Q |
111 |
acacattcatggtgttggaaattcaaattaaaaaatgaacaaaatcatcatgtattcataaaacttgtttaggcttggtnnnnnnnncaaaataacttac |
210 |
Q |
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| T |
1325584 |
acacattcatggtgttggaaattcaaattaaaaaatgaacaaaatcatcatgtattcataaaacttgtttaggtttggtaaaaaaaacaaaataacttac |
1325485 |
T |
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| Q |
211 |
ttaggacatgcacatcatactttgagaataat |
242 |
Q |
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| T |
1325484 |
ttaggacatgcacatcatactttgagaataat |
1325453 |
T |
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