View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_48 (Length: 251)
Name: NF1121_low_48
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48384963 - 48385198
Alignment:
| Q |
1 |
caggggtcctagtagtggtgaccataatagtgtggcttcttctaatggagattgcgacaacaaaagtacttgtattcctctcatcgcagctagtactcgc |
100 |
Q |
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| T |
48384963 |
caggggtcctagtagtggtgaccataatagtgtggcttcttctaatggagattgcgacaacaaaagtacttgtattcctctcatcgcagctagtactcgc |
48385062 |
T |
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| Q |
101 |
ggctttcatgtttggaaacacgtgcaagaatatatttgaagccatcatcttcgtgtttgtaatgcatccgttcgatgttggcgatcggtgtgttatagat |
200 |
Q |
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| T |
48385063 |
ggctttcatgtttggaaacacgtgcaagaatatttttgaagccatcatcttcgtgtttgtaatgcatccgttcgatgttggcgatcggtgtgttatagat |
48385162 |
T |
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| Q |
201 |
ggtgttgaggtaacttctgtagctgccaaatttaat |
236 |
Q |
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| T |
48385163 |
ggtgttgaggtaacttctgtagctgccgaatttaat |
48385198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 48397149 - 48396937
Alignment:
| Q |
1 |
caggggtcctagtagtggtgaccataatagtgtggcttcttctaatggagattgcgacaacaaaagtacttgtattcctctcatcgcagctagtactcgc |
100 |
Q |
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| T |
48397149 |
caggggtcctagtagtggtgaccatagtagtgtggcttcttctaatggagattgcaacaacaaaagtacttgtattcctctcatcacagctagtacttgc |
48397050 |
T |
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| Q |
101 |
ggctttcatgtttggaaacacgtgcaagaatatatttgaagccatcatcttcgtgtttgtaatgcatccgttcgatgttggcgatcggtgtgttatagat |
200 |
Q |
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| T |
48397049 |
ggctttcatgtttggaaacacgtgcaagaatatatttgaagccatcatcttcgtgtttgtaatgcatccatttgatgttggcgatcgatgttttatagat |
48396950 |
T |
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| Q |
201 |
ggtgttgaggtaa |
213 |
Q |
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| T |
48396949 |
ggtgttgaggtaa |
48396937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 48365433 - 48365637
Alignment:
| Q |
12 |
gtagtggtgaccataatagtgtggcttcttctaatggagattgcgacaacaaaagtacttgtattcctctcatcgcagctagtactcgcggctttcatgt |
111 |
Q |
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| T |
48365433 |
gtagtggtgagcatagtagtgtggcttcttctaatggagattgcaacaacaaaagtacttgtattcctctcatcacagctagtactagcggggttcatgt |
48365532 |
T |
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| Q |
112 |
ttggaaacacgtgcaagaatatatttgaagccatcatcttcgtgtttgtaatgcatccgttcgatgttggcgatcggtgtgttatagatggtgttgaggt |
211 |
Q |
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| T |
48365533 |
ttggaaacacgtgcaagaatatatttgaagccatcatcttcgtctttgtaatgcatccattcgatgttggcgatcgttgtgttgtagatggtgttgaggt |
48365632 |
T |
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| Q |
212 |
aactt |
216 |
Q |
| |
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||||| |
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| T |
48365633 |
aactt |
48365637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 18081174 - 18081253
Alignment:
| Q |
133 |
tatttgaagccatcatcttcgtgtttgtaatgcatccgttcgatgttggcgatcggtgtgttatagatggtgttgaggta |
212 |
Q |
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|||||||||| || || || || ||||| ||||||||||||||||| || ||||| ||||| || ||||||||| ||||| |
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| T |
18081174 |
tatttgaagctattatatttgtttttgtgatgcatccgttcgatgtcggtgatcgttgtgtcattgatggtgttcaggta |
18081253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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