View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1121_low_50 (Length: 251)

Name: NF1121_low_50
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1121_low_50
NF1121_low_50
[»] chr1 (14 HSPs)
chr1 (1-222)||(9240653-9240875)
chr1 (139-222)||(33864238-33864321)
chr1 (139-222)||(33916601-33916684)
chr1 (139-221)||(7261505-7261587)
chr1 (138-222)||(13437034-13437118)
chr1 (138-222)||(44228460-44228544)
chr1 (139-203)||(22315210-22315274)
chr1 (139-220)||(17890132-17890212)
chr1 (139-174)||(33864115-33864150)
chr1 (139-174)||(33916772-33916807)
chr1 (139-217)||(5469514-5469592)
chr1 (144-202)||(33465319-33465377)
chr1 (139-221)||(44078716-44078798)
chr1 (138-192)||(44228338-44228392)
[»] chr7 (21 HSPs)
chr7 (143-222)||(45687693-45687771)
chr7 (138-222)||(24812949-24813033)
chr7 (140-222)||(2936188-2936270)
chr7 (138-222)||(1853315-1853399)
chr7 (77-221)||(9689226-9689370)
chr7 (138-222)||(27082593-27082677)
chr7 (138-222)||(27195624-27195708)
chr7 (140-222)||(43393925-43394007)
chr7 (138-222)||(19377107-19377192)
chr7 (138-222)||(3092291-3092375)
chr7 (139-222)||(42957424-42957507)
chr7 (143-192)||(15331628-15331677)
chr7 (139-222)||(25601798-25601881)
chr7 (142-188)||(27082749-27082795)
chr7 (142-188)||(27195506-27195552)
chr7 (138-191)||(2936339-2936392)
chr7 (141-174)||(8490803-8490836)
chr7 (143-220)||(10394471-10394548)
chr7 (139-192)||(25601949-25602002)
chr7 (139-171)||(3092495-3092527)
chr7 (146-222)||(21074266-21074342)
[»] chr3 (11 HSPs)
chr3 (139-221)||(18359295-18359377)
chr3 (138-222)||(5303667-5303751)
chr3 (139-222)||(55257704-55257787)
chr3 (139-221)||(43426423-43426505)
chr3 (139-222)||(7308225-7308308)
chr3 (178-222)||(25124871-25124915)
chr3 (138-222)||(17030744-17030829)
chr3 (78-125)||(25125080-25125126)
chr3 (139-222)||(25159046-25159129)
chr3 (178-222)||(17582528-17582572)
chr3 (142-222)||(30226286-30226366)
[»] chr8 (13 HSPs)
chr8 (139-222)||(23289067-23289150)
chr8 (139-222)||(9235504-9235587)
chr8 (142-221)||(11908468-11908547)
chr8 (138-220)||(28786365-28786447)
chr8 (139-217)||(13373240-13373318)
chr8 (157-218)||(8980741-8980802)
chr8 (142-186)||(14529693-14529737)
chr8 (178-221)||(14698250-14698292)
chr8 (147-221)||(39274133-39274207)
chr8 (139-192)||(13980023-13980076)
chr8 (177-222)||(24375791-24375836)
chr8 (138-222)||(23245708-23245792)
chr8 (138-174)||(24754627-24754663)
[»] chr4 (13 HSPs)
chr4 (139-222)||(9780392-9780475)
chr4 (138-221)||(49277726-49277809)
chr4 (77-221)||(13555603-13555747)
chr4 (139-219)||(5283820-5283900)
chr4 (139-222)||(8810095-8810178)
chr4 (139-222)||(16734268-16734350)
chr4 (139-222)||(8678889-8678973)
chr4 (77-123)||(9780326-9780372)
chr4 (139-217)||(16875937-16876015)
chr4 (139-192)||(16734144-16734197)
chr4 (139-192)||(29700563-29700616)
chr4 (146-222)||(42161433-42161509)
chr4 (139-191)||(23091876-23091928)
[»] chr2 (9 HSPs)
chr2 (138-222)||(11478051-11478135)
chr2 (139-222)||(42223242-42223325)
chr2 (139-222)||(16590633-16590716)
chr2 (139-222)||(35791181-35791264)
chr2 (157-222)||(31989539-31989604)
chr2 (139-222)||(41906206-41906289)
chr2 (142-188)||(31396692-31396738)
chr2 (138-222)||(41567314-41567398)
chr2 (77-113)||(41905992-41906028)
[»] chr6 (7 HSPs)
chr6 (142-222)||(33198591-33198671)
chr6 (138-222)||(3816551-3816634)
chr6 (139-222)||(9044616-9044699)
chr6 (142-222)||(25167070-25167150)
chr6 (139-193)||(3816702-3816756)
chr6 (77-123)||(33200081-33200127)
chr6 (139-172)||(20757498-20757531)
[»] chr5 (7 HSPs)
chr5 (139-221)||(21144023-21144105)
chr5 (139-221)||(37869528-37869611)
chr5 (78-222)||(13153539-13153682)
chr5 (139-219)||(20355234-20355314)
chr5 (141-174)||(7216575-7216608)
chr5 (157-222)||(20628041-20628106)
chr5 (178-222)||(42779019-42779063)
[»] scaffold0188 (1 HSPs)
scaffold0188 (138-222)||(13300-13385)
[»] scaffold0003 (1 HSPs)
scaffold0003 (157-222)||(306694-306759)
[»] scaffold0067 (1 HSPs)
scaffold0067 (142-222)||(25897-25976)
[»] scaffold0004 (1 HSPs)
scaffold0004 (142-222)||(82364-82444)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9240875 - 9240653
Alignment:
1 ccatatgcttcccaagagtttgtgtcttattagctgcttgtgatgtttcattttcatatttctgctttaattaaatgttaatacatgtttatccc-ctgt 99  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | |||     
9240875 ccatatgcttgccaagagtttgtgtcttattagctgcatgtgatgtttcattttcatatttctgctttaattaaaggttaatccatgtttatctctctga 9240776  T
100 aatattatcgatttccgatttacctctctatnnnnnnntttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaa 199  Q
    |||||||||||||| || ||||||||| |||       ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
9240775 aatattatcgattttcggtttacctctatataaaattttttgtttagattcaaaccctgtaacttgaagattcttcagttttaaaccttcatggcatcaa 9240676  T
200 attatgaaatttaaggtactttc 222  Q
    |||||||||||||||||||||||    
9240675 attatgaaatttaaggtactttc 9240653  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 33864321 - 33864238
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| |||||| ||||||||||||||  |||||||||||| ||||    
33864321 ttgtttagattccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttc 33864238  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 33916601 - 33916684
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| |||||| ||||||||||||||  |||||||||||| ||||    
33916601 ttgtttagattccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttc 33916684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 7261587 - 7261505
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    ||||||||||||||||||||||| ||||| ||||||  ||||| |||||||||| |||||||||   ||||| ||||||||||    
7261587 ttgtttagattccaaccctgtaatttgaacattctttggttttggaccttcatgacatcaaatttcaaaattgaaggtacttt 7261505  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 13437118 - 13437034
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||||||| ||||| |||| |||| ||   |||| |||||||||| ||||||||||  |||||||||||||||||    
13437118 tttgtttagattccaaccgtgtaatttgatgattttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttc 13437034  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 44228544 - 44228460
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| |||||| |||| ||||||||||||  | ||| ||||||| ||||||||||||   |||||||||||||||||    
44228544 tttgtttagattgcaacccagtaatttgaagattctttgggtttggaccttcgtggcatcaaatttcaaaatttaaggtactttc 44228460  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 22315210 - 22315274
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaatta 203  Q
    ||||||||||||||||||||||| ||||||||| ||   |||| |||||||||||||||| ||||    
22315210 ttgtttagattccaaccctgtaatttgaagattttttgattttggaccttcatggcatcatatta 22315274  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 17890132 - 17890212
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactt 220  Q
    ||||||||||||||||||||||| || |||||| || | |||| || | |||| |||||||||||  |||||||||||||||    
17890132 ttgtttagattccaaccctgtaatttaaagatttttta-ttttggatcctcatagcatcaaattacaaaatttaaggtactt 17890212  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 33864115 - 33864150
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattctt 174  Q
    ||||||||||||||||||||||| ||||||||||||    
33864115 ttgtttagattccaaccctgtaatttgaagattctt 33864150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 33916807 - 33916772
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattctt 174  Q
    ||||||||||||||||||||||| ||||||||||||    
33916807 ttgtttagattccaaccctgtaatttgaagattctt 33916772  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 5469592 - 5469514
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggta 217  Q
    ||||||||||||||||| ||||| |||||  || ||   |||| |||||||||||||||||| ||  ||||||||||||    
5469592 ttgtttagattccaaccttgtaatttgaattttttttgattttggaccttcatggcatcaaactacaaaatttaaggta 5469514  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 33465319 - 33465377
Alignment:
144 tagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaatt 202  Q
    |||||| ||||||||||| || || ||||||  ||||||||||||| ||||||||||||    
33465319 tagattacaaccctgtaatttaaatattctttggttttagaccttcttggcatcaaatt 33465377  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 44078798 - 44078716
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    ||||||||||||||||| ||||| |||||||| |||  ||||| ||||||| |  ||| |||||   ||||||||||||||||    
44078798 ttgtttagattccaaccttgtaatttgaagatccttttgttttggaccttcctaacataaaatttcaaaatttaaggtacttt 44078716  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 44228338 - 44228392
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatg 192  Q
    |||||||||||| ||||||||||| || |||||||||  ||||| ||||||||||    
44228338 tttgtttagattacaaccctgtaatttaaagattctttggttttggaccttcatg 44228392  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 45687693 - 45687771
Alignment:
143 ttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||| ||||||||||||  | |||||||||||||||||||||||||| |||||||||||||||||    
45687693 ttagattccaaccctgtaatttgaagattcttt-gatttagaccttcatggcatcaaattataaaatttaaggtactttc 45687771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 24813033 - 24812949
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| ||||||||||| ||||||||||||  |||||||||||| | ||||||||||||  |||||||||||||||||    
24813033 tttgtttagatttcaaccctgtaatttgaagattctttggttttagacctttaaggcatcaaattacaaaatttaaggtactttc 24812949  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 2936188 - 2936270
Alignment:
140 tgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||||| ||||| ||||| ||| ||  |||||||||||||||| ||||||||||  |||||||||||||||||    
2936188 tgtttagattccaaccatgtaatttgaaaattatttggttttagaccttcatgacatcaaattacaaaatttaaggtactttc 2936270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 1853399 - 1853315
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||||||| ||||| ||||||||| ||   |||| ||||||||||||||||||||   |||||||||||||||||    
1853399 tttgtttagattccaaccttgtaatttgaagattttttgattttggaccttcatggcatcaaatttcaaaatttaaggtactttc 1853315  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 9689226 - 9689370
Alignment:
77 gttaatacatgtttatcccctgtaatattatcgatttccgatttacctctctatnnnnnnntttgtttagattccaaccctgtaacttgaagattcttca 176  Q
    ||||||| ||||||| || ||||||||||| ||||||||| |||||| || ||        |||| ||||||| ||||||||||| ||||||||| ||      
9689226 gttaatatatgtttaccctctgtaatattagcgatttccggtttacccctgta-aaaaaaatttggttagatttcaaccctgtaatttgaagattttttt 9689324  T
177 g-ttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    | |||| |||||||||| ||||||||||| ||||||||||||||||    
9689325 gattttggaccttcatgacatcaaattataaaatttaaggtacttt 9689370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 27082593 - 27082677
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||| || |||  |||||||||  || ||||||||||||||    
27082593 tttgtttagattccaacactgtaacttgaagattctttggttttagacatttatgaaatcaaattacaaagtttaaggtactttc 27082677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 27195708 - 27195624
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||| || |||  |||||||||  || ||||||||||||||    
27195708 tttgtttagattccaacactgtaacttgaagattctttggttttagacatttatgaaatcaaattacaaagtttaaggtactttc 27195624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 43394007 - 43393925
Alignment:
140 tgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||| ||| ||||||||||| ||||||||| ||   |||| |||||||||||||||||||||  |||||||||||||||||    
43394007 tgtttaaatttcaaccctgtaatttgaagatttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttc 43393925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 19377192 - 19377107
Alignment:
138 tttgtttagattccaaccc-tgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||| ||||| ||||||||  ||   |||| |||||||||||| ||||||||  |||||||||||||||||    
19377192 tttgtttagattccaacccctgtaatttgaagatatttttattttggaccttcatggcgtcaaattacaaaatttaaggtactttc 19377107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 3092291 - 3092375
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| ||||| ||||| || |||||| ||   ||||| ||||||||  ||||||||||| |||||||||||||||||    
3092291 tttgtttagatttcaaccttgtaatttaaagattttttgattttaaaccttcattacatcaaattataaaatttaaggtactttc 3092375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 42957424 - 42957507
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| |||||||||| |||||  || ||   |||| |||||||||| ||||||||||  |||||||||||||||||    
42957424 ttgtttagattctaaccctgtaatttgaattttttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttc 42957507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 15331677 - 15331628
Alignment:
143 ttagattccaaccctgtaacttgaagattcttcagttttagaccttcatg 192  Q
    ||||||||||||||||||||||||||||||||  || ||| |||||||||    
15331677 ttagattccaaccctgtaacttgaagattctttggtgttataccttcatg 15331628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 25601798 - 25601881
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||| ||||| ||||||||| ||  | || | |||||||||  |||||||||  |||||||| ||||||||    
25601798 ttgtttagattccaaccttgtaatttgaagattttttggcttaaaaccttcatgatatcaaattacaaaatttaatgtactttc 25601881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 27082795 - 27082749
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagacctt 188  Q
    |||||||||||||||||||| ||||||||| ||  ||||||||||||    
27082795 tttagattccaaccctgtaatttgaagattatttggttttagacctt 27082749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 27195506 - 27195552
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagacctt 188  Q
    |||||||||||||||||||| ||||||||| ||  ||||||||||||    
27195506 tttagattccaaccctgtaatttgaagattatttggttttagacctt 27195552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 2936392 - 2936339
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcat 191  Q
    |||||||||||| ||||| ||||| ||||||||||||  ||||| |||||||||    
2936392 tttgtttagatttcaaccatgtaatttgaagattctttggttttcgaccttcat 2936339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 8490836 - 8490803
Alignment:
141 gtttagattccaaccctgtaacttgaagattctt 174  Q
    ||||||||||||||||||||| ||||||||||||    
8490836 gtttagattccaaccctgtaatttgaagattctt 8490803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 10394471 - 10394548
Alignment:
143 ttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactt 220  Q
    ||||||| ||||  ||||| ||||||||||||  |||||  | |||||| |||||||||||| |||||||||| ||||    
10394471 ttagatttcaactttgtaatttgaagattctttggttttgtatcttcatagcatcaaattataaaatttaaggcactt 10394548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 25602002 - 25601949
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatg 192  Q
    ||||||||||||||| ||||||| ||||||||| ||| |||||| || ||||||    
25602002 ttgtttagattccaatcctgtaatttgaagatttttcggttttaaacattcatg 25601949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 3092527 - 3092495
Alignment:
139 ttgtttagattccaaccctgtaacttgaagatt 171  Q
    ||||||||||||||||||||||| |||||||||    
3092527 ttgtttagattccaaccctgtaatttgaagatt 3092495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 21074266 - 21074342
Alignment:
146 gattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||| |||| ||||| ||  |||||||||  |||||||||||| ||||||||||||| |  ||| |||||||||||    
21074266 gattctaaccttgtaatttttagattcttctcttttagaccttcgtggcatcaaattacgggattaaaggtactttc 21074342  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 18359295 - 18359377
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||  | |||||||||||||||  ||||||||||||||||    
18359295 ttgtttagattccaaccctgtaatttgaagattctttagttttagatatacatggcatcaaattacaaaatttaaggtacttt 18359377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 5303751 - 5303667
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||   || |||||||||||||    
5303751 tttgtttagattccaaccctgtaatttgaagattctttggttttagaccttcatgacatcaaattacagaacttaaggtactttc 5303667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 55257704 - 55257787
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||| ||| ||||||||| ||   |||| |||||||||||||||||||||  |||||||||||||||||    
55257704 ttgtttagattccaaccctataatttgaagatttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttc 55257787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 43426505 - 43426423
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    |||||||||||| |||||||||| ||||||||| ||   |||||||||||||| |||||||||||  ||||||||||||||||    
43426505 ttgtttagattcgaaccctgtaatttgaagattttttgattttagaccttcatagcatcaaattacaaaatttaaggtacttt 43426423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 7308308 - 7308225
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||| ||||||||||||| ||| ||||||||| ||   |||| |||||||||||||||||||||  |||||||||||||||||    
7308308 ttgttcagattccaaccctataatttgaagatttttttatttttgaccttcatggcatcaaattacaaaatttaaggtactttc 7308225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 25124871 - 25124915
Alignment:
178 ttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||| |||||||||||||||||||||| |||||||||||||||||    
25124871 ttttggaccttcatggcatcaaattataaaatttaaggtactttc 25124915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 17030829 - 17030744
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcag-ttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||| |||| ||||||| ||| || |||||| ||  | |||| |||||||||||||||||||||  |||||||||||||||||    
17030829 tttgttttgatttcaaccctctaatttaaagatttttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttc 17030744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 25125126 - 25125080
Alignment:
78 ttaatacatgtttatcccctgtaatattatcgatttccgatttacctc 125  Q
    |||||||||||||| |||||||||||||| |||||| |||||||||||    
25125126 ttaatacatgttta-cccctgtaatattagcgattttcgatttacctc 25125080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 25159129 - 25159046
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| |||| ||||| ||||| ||| ||   |||| ||| |||||||||||||||||  |||||||||||| ||||    
25159129 ttgtttagattctaaccttgtaatttgaatattttttgattttggacgttcatggcatcaaattacaaaatttaaggtattttc 25159046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 17582572 - 17582528
Alignment:
178 ttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||| ||||||||| |||||||||||  |||||||||||||||||    
17582572 ttttggaccttcatagcatcaaattacaaaatttaaggtactttc 17582528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 30226366 - 30226286
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||| |  ||||| ||||||||||||   |||| |||||||||| || |||||||  ||||||| |||||||||    
30226366 tttagattccatcattgtaatttgaagattctttgattttggaccttcatgacaacaaattacaaaatttatggtactttc 30226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 23289150 - 23289067
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||||||| ||||||||| || |  ||| |||||||||||||||||||||  |||||||||||||||||    
23289150 ttgtttagattccaaccctgtaatttgaagattttttaactttggaccttcatggcatcaaattacaaaatttaaggtactttc 23289067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 9235587 - 9235504
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||| ||||||||||| ||||||||| ||   |||| |||||||||||||||||||||  |||||||||||||||||    
9235587 ttgtttagatttcaaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttc 9235504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 11908468 - 11908547
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    |||||||||||||| ||||| |||||||||||   ||||  ||||||||||||||||||||   ||||||||||||||||    
11908468 tttagattccaaccatgtaatttgaagattctatggtttaggaccttcatggcatcaaatttcaaaatttaaggtacttt 11908547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 28786365 - 28786447
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactt 220  Q
    |||||||||||||||||||||||||| ||||||| ||   |||| ||||||||||||||||| ||   || ||||||||||||    
28786365 tttgtttagattccaaccctgtaactagaagattatttgattttggaccttcatggcatcaattttcaaactttaaggtactt 28786447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 13373240 - 13373318
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggta 217  Q
    ||||||| ||| |||| |||||| ||||||||||||  |||||  |||||| |||||||||||||  ||||||||||||    
13373240 ttgtttatatttcaactctgtaatttgaagattctttggttttgaaccttcctggcatcaaattacaaaatttaaggta 13373318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 8980802 - 8980741
Alignment:
157 tgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtac 218  Q
    ||||| |||||||||||| |||||| |||||||||| ||||||||||  ||||||| |||||    
8980802 tgtaatttgaagattctttagttttggaccttcatgacatcaaattacaaaatttatggtac 8980741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 14529693 - 14529737
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagacc 186  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||    
14529693 tttagattccaaccctgtaatttgaagattctttcgttttagacc 14529737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 14698292 - 14698250
Alignment:
178 ttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
14698292 ttttagaccttcatggcatc-aattataaaatttaaggtacttt 14698250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 39274207 - 39274133
Alignment:
147 attccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    ||||||||| ||||| || || |||||||  |||||||||||| |||||||||||| ||  ||| ||||||||||    
39274207 attccaaccttgtaatttaaatattcttctcttttagaccttcgtggcatcaaattttgggattaaaggtacttt 39274133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 13980076 - 13980023
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatg 192  Q
    |||||||||||| |||||||||| ||||||||||||   |||| ||||||||||    
13980076 ttgtttagattctaaccctgtaatttgaagattctttgattttggaccttcatg 13980023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 24375791 - 24375836
Alignment:
177 gttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||| |||||||||||||||||||||  ||||||| |||||||||    
24375791 gttttggaccttcatggcatcaaattacaaaatttatggtactttc 24375836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 23245792 - 23245708
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||  ||| ||||||||||| ||||||||| ||   |||| |||||  ||||||| ||||| | |||||||||||||||||    
23245792 tttgtttctatttcaaccctgtaatttgaagattttttgattttggacctatatggcattaaattttaaaatttaaggtactttc 23245708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 24754627 - 24754663
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattctt 174  Q
    |||||||||||||||||| ||||| ||||||||||||    
24754627 tttgtttagattccaaccatgtaatttgaagattctt 24754663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 9780392 - 9780475
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||||||| ||||||||||||   |||| ||||| |||||||||||||||  |||||||||||||||||    
9780392 ttgtttagattccaaccctgtaatttgaagattctttgattttcgacctacatggcatcaaattaaaaaatttaaggtactttc 9780475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 49277726 - 49277809
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    |||||||||||||||||| ||||| ||||| ||| ||  ||||| |||||||||||||||||||||  ||||||||||||||||    
49277726 tttgtttagattccaaccgtgtaatttgaaaattatttggttttggaccttcatggcatcaaattacaaaatttaaggtacttt 49277809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 13555603 - 13555747
Alignment:
77 gttaatacatgtttatcccctgtaatattatcgatttccgatttacctctctatnnnnnnntttgtttagattccaaccctgtaacttgaagattcttca 176  Q
    ||||||| ||||||| || ||||||||||| ||||||||| |||||| || ||        |||| ||||||| ||||||||||| ||||||||| ||      
13555603 gttaatatatgtttaccctctgtaatattagcgatttccggtttacccctgta-aaaaaaatttggttagatttcaaccctgtaatttgaagattttttt 13555701  T
177 g-ttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    | |||| |||||||||| ||||||||||| ||||||||||||||||    
13555702 gattttggaccttcatgacatcaaattataaaatttaaggtacttt 13555747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 5283900 - 5283820
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtact 219  Q
    ||||||||||||||| ||||||| ||||||||| ||   ||||  ||||||||||||||||||||  ||||||||||||||    
5283900 ttgtttagattccaatcctgtaatttgaagattttttgattttgaaccttcatggcatcaaattaaaaaatttaaggtact 5283820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 8810178 - 8810095
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||| ||||| ||||| ||||| ||||||||| ||   |||| |||||||||| ||||||||||| |||||||||||||||||    
8810178 ttgttaagatttcaaccttgtaatttgaagatttttttattttggaccttcatgacatcaaattataaaatttaaggtactttc 8810095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 16734350 - 16734268
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||| ||||| ||||| ||||||||||||   ||||||||||||||||||| ||||||  |||||||||||| ||||    
16734350 ttgtttagatttcaacc-tgtaatttgaagattctttgattttagaccttcatggcataaaattacaaaatttaaggtattttc 16734268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 8678889 - 8678973
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcag-ttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| |||| ||||| ||||||||| ||    |||| |||||||||||||||||||||  |||||||||||||||||    
8678889 ttgtttagattcaaaccttgtaatttgaagattttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttc 8678973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 9780326 - 9780372
Alignment:
77 gttaatacatgtttatcccctgtaatattatcgatttccgatttacc 123  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||||    
9780326 gttaatatatgtttatcccatgtaatattaacgatttccgatttacc 9780372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 16875937 - 16876015
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggta 217  Q
    ||||||||||| ||||| ||||  ||||||||||||   |||| |||||| ||||||||||||||  ||||||||||||    
16875937 ttgtttagattacaaccttgtagtttgaagattctttgattttcgacctttatggcatcaaattacaaaatttaaggta 16876015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 16734144 - 16734197
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatg 192  Q
    ||||||||||||||||||||||| |||||||||||   |||||||| |||||||    
16734144 ttgtttagattccaaccctgtaatttgaagattctatggttttagagcttcatg 16734197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 29700563 - 29700616
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatg 192  Q
    ||||||||||||||||||||| | |||||||||||| | |||| ||||||||||    
29700563 ttgtttagattccaaccctgttatttgaagattctttaatttttgaccttcatg 29700616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 42161509 - 42161433
Alignment:
146 gattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||| ||||||| ||||||||  || | |||| |||||| | ||||||||||||  |||||||||||||||||    
42161509 gattccaatcctgtaatttgaagatcttttaattttggaccttgaaggcatcaaattacaaaatttaaggtactttc 42161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 23091928 - 23091876
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcat 191  Q
    ||||||||||||||||| ||||| ||||||||| || ||||||  ||||||||    
23091928 ttgtttagattccaaccttgtaatttgaagattttttagttttgaaccttcat 23091876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 11478051 - 11478135
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| ||||||||||| ||||| ||||||  ||||| ||||||||| |||||||||||  |||||||||||||||||    
11478051 tttgtttagatttcaaccctgtaatttgaaaattctttggttttggaccttcatagcatcaaattacaaaatttaaggtactttc 11478135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 42223325 - 42223242
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||||||||||||||| ||||||||| ||   ||||  ||||||||||||||||||||  |||||||||||||||||    
42223325 ttgtttagattccaaccctgtaatttgaagattttttgattttgaaccttcatggcatcaaattacaaaatttaaggtactttc 42223242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 16590716 - 16590633
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||| ||| ||| ||||||| ||||||||| ||  ||||| |||||||||| ||||||||||  |||||||||||||||||    
16590716 ttgtttatatttcaaacctgtaatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaaggtactttc 16590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 35791264 - 35791181
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||| |||| |||||| || |||||||||   ||||| ||||||||| ||||||||||  |||||||||||||||||    
35791264 ttgtttagatttcaactctgtaatttaaagattctttgattttaaaccttcatgccatcaaattacaaaatttaaggtactttc 35791181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 31989604 - 31989539
Alignment:
157 tgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||| ||||||||||||  ||||| |||||||||||||||||||||  ||||||| |||||||||    
31989604 tgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaatttatggtactttc 31989539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 41906289 - 41906206
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||| ||| ||||| ||||| ||||||||| ||   |||| |||||| ||||||||||||||  |||||| ||||||||||    
41906289 ttgtttaaatttcaaccttgtaatttgaagatttttttattttggacctttatggcatcaaattacaaaattttaggtactttc 41906206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 31396692 - 31396738
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagacctt 188  Q
    |||||||||||||||||||| || |||||||||| |||||| |||||    
31396692 tttagattccaaccctgtaatttaaagattcttcggttttaaacctt 31396738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 41567314 - 41567398
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||| ||||| ||||| ||||| ||| |||  |||| || ||| |||| ||||||||   |||||||||||||||||    
41567314 tttgtttagatttcaaccttgtaatttgaaaattattcgattttggatctttatggtatcaaatttcaaaatttaaggtactttc 41567398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 41905992 - 41906028
Alignment:
77 gttaatacatgtttatcccctgtaatattatcgattt 113  Q
    ||||||||||||||| |||||||||||||| ||||||    
41905992 gttaatacatgtttaccccctgtaatattagcgattt 41906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 33198591 - 33198671
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||||||| |||| ||| ||||||||||||  ||||||||| |||||||||||||||||  |||||||||| ||||||    
33198591 tttagattccatccctataatttgaagattctttggttttagacattcatggcatcaaattacaaaatttaaggcactttc 33198671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 3816551 - 3816634
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||||||| | ||| || |||||||||  |||||  | ||||||||||||||||||| |||||||||||||||||    
3816551 tttgtttagattccaacc-tataatttaaagattctttggttttgaatcttcatggcatcaaattataaaatttaaggtactttc 3816634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 9044699 - 9044616
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||||| ||||||||| ||||| ||||||||| ||   |||| ||||||||||||||||||||||  |||||||| |||||||    
9044699 ttgtttaaattccaaccttgtaatttgaagattatttgattttggaccttcatggcatcaaattatataatttaagatactttc 9044616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 25167150 - 25167070
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||  ||||| ||||||||| ||   |||| || ||||||||||||||||||  |||||||||||||||||    
25167150 tttagattccaactgtgtaatttgaagattatttgattttggatcttcatggcatcaaattacaaaatttaaggtactttc 25167070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 3816756 - 3816702
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatgg 193  Q
    ||||||||||| ||||||||||| ||||||||||||  ||||| |||||||||||    
3816756 ttgtttagatttcaaccctgtaatttgaagattctttggtttttgaccttcatgg 3816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 33200127 - 33200081
Alignment:
77 gttaatacatgtttatcccctgtaatattatcgatttccgatttacc 123  Q
    ||||||||||||||| ||| |||||||||| |||||||| |||||||    
33200127 gttaatacatgtttaccccatgtaatattagcgatttccaatttacc 33200081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 20757498 - 20757531
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattc 172  Q
    ||||||||||||||||||||||| ||||||||||    
20757498 ttgtttagattccaaccctgtaatttgaagattc 20757531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 21144023 - 21144105
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    ||||||||||||||||||||||| ||||||||| ||   |||| |||||||||||||||||||||  |||||| | |||||||    
21144023 ttgtttagattccaaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttgatgtacttt 21144105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 37869611 - 37869528
Alignment:
139 ttgtttagatt-ccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtacttt 221  Q
    ||||||||||| |||||| ||||| ||||||||||||   |||| |||||||||| ||||||||||  ||||||||||||||||    
37869611 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 37869528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 13153539 - 13153682
Alignment:
78 ttaatacatgtttatcccctgtaatattatcgatttccgatttacctctctatnnnnnnntttgtttagattccaaccctgtaacttgaaga-ttcttca 176  Q
    |||||| || |||| ||||| |||||||| ||||||||| ||||| ||||| |       |||||||||||||||||| ||||| ||||||| ||||| |    
13153539 ttaatatatatttaccccct-taatattagcgatttccggtttacatctctgtaaaaaaatttgtttagattccaaccttgtaatttgaagatttcttta 13153637  T
177 gttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
     |||| ||||||||| |||||||| ||  ||||||| |||||||||    
13153638 -ttttggaccttcatagcatcaaaatacaaaatttacggtactttc 13153682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 20355314 - 20355234
Alignment:
139 ttgtttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtact 219  Q
    ||||||||||||||| ||||||| ||||||||| ||   ||||  ||||| ||||||||||||||  ||||||||||||||    
20355314 ttgtttagattccaatcctgtaatttgaagattttttgattttgaaccttgatggcatcaaattaaaaaatttaaggtact 20355234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 7216608 - 7216575
Alignment:
141 gtttagattccaaccctgtaacttgaagattctt 174  Q
    ||||||||||||||||||||| ||||||||||||    
7216608 gtttagattccaaccctgtaatttgaagattctt 7216575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 20628041 - 20628106
Alignment:
157 tgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||| ||||| ||||||  ||||| ||||||| |||||||||||||  ||||||| |||||||||    
20628041 tgtaatttgaaaattctttggttttggaccttcttggcatcaaattacaaaatttatggtactttc 20628106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 42779063 - 42779019
Alignment:
178 ttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||| |||||||||| ||||||||||  |||||||||||||||||    
42779063 ttttggaccttcatgacatcaaattacaaaatttaaggtactttc 42779019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 13385 - 13300
Alignment:
138 tttgtttagattccaaccctgtaacttgaagattcttcag-ttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||||||| ||||| ||||||||| ||  | |||| |||||||||| ||||||||||  |||||||||||||||||    
13385 tttgtttagattccaaccttgtaatttgaagatttttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttc 13300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 306759 - 306694
Alignment:
157 tgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    ||||| ||||||||||||  ||||| |||||||||||||||||||||  ||||||| |||||||||    
306759 tgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaatttatggtactttc 306694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 25976 - 25897
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||||||||||| ||| |||||| || ||   |||| |||||||||||||||||||||  |||||||||||||||||    
25976 tttagattccaaccct-taatttgaaggttttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttc 25897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 82444 - 82364
Alignment:
142 tttagattccaaccctgtaacttgaagattcttcagttttagaccttcatggcatcaaattatgaaatttaaggtactttc 222  Q
    |||||||| ||||||| ||| || |||||| ||   |||| ||||||||||  |||||||||  |||||||||||||||||    
82444 tttagatttcaaccctttaatttaaagattgtttgattttggaccttcatgatatcaaattacaaaatttaaggtactttc 82364  T

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