View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_52 (Length: 231)
Name: NF1121_low_52
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 43259089 - 43259217
Alignment:
| Q |
15 |
accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttacccatggagcca |
114 |
Q |
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| T |
43259089 |
accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggagcca |
43259188 |
T |
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| Q |
115 |
ggattgtaccaatcttggaatcttctgtg |
143 |
Q |
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| T |
43259189 |
ggattgtaccaatcttggaatcttctgtg |
43259217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 43255823 - 43255951
Alignment:
| Q |
15 |
accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttacccatggagcca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
43255823 |
accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaacca |
43255922 |
T |
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| Q |
115 |
ggattgtaccaatcttggaatcttctgtg |
143 |
Q |
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| T |
43255923 |
ggattgtaccaatcttggagtcttctgtg |
43255951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 43247826 - 43247918
Alignment:
| Q |
15 |
accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttacccat |
107 |
Q |
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| T |
43247826 |
accaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttcccat |
43247918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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