View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1121_low_55 (Length: 202)

Name: NF1121_low_55
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1121_low_55
NF1121_low_55
[»] chr2 (8 HSPs)
chr2 (16-183)||(17213335-17213502)
chr2 (96-164)||(10562442-10562510)
chr2 (120-159)||(13849874-13849913)
chr2 (99-158)||(32323677-32323736)
chr2 (106-168)||(32901114-32901176)
chr2 (120-169)||(37116742-37116791)
chr2 (95-159)||(479132-479196)
chr2 (95-159)||(15677450-15677514)
[»] chr3 (5 HSPs)
chr3 (98-153)||(3035581-3035636)
chr3 (97-159)||(34266600-34266662)
chr3 (96-159)||(44873956-44874020)
chr3 (97-159)||(29698013-29698075)
chr3 (95-143)||(34750675-34750723)
[»] chr8 (7 HSPs)
chr8 (97-152)||(38238939-38238994)
chr8 (94-164)||(9706639-9706708)
chr8 (97-159)||(11060999-11061061)
chr8 (95-169)||(26628856-26628930)
chr8 (97-159)||(34046873-34046935)
chr8 (111-153)||(35593693-35593734)
chr8 (119-164)||(33751244-33751289)
[»] chr7 (5 HSPs)
chr7 (95-146)||(46392609-46392660)
chr7 (104-164)||(6737258-6737318)
chr7 (95-143)||(32049433-32049481)
chr7 (95-169)||(41480638-41480712)
chr7 (99-159)||(44820756-44820816)
[»] chr4 (17 HSPs)
chr4 (98-159)||(9840410-9840471)
chr4 (97-169)||(47596760-47596832)
chr4 (97-159)||(36408748-36408810)
chr4 (97-159)||(36422914-36422976)
chr4 (106-167)||(25396065-25396126)
chr4 (95-159)||(8735412-8735476)
chr4 (95-159)||(39683871-39683935)
chr4 (108-152)||(51978794-51978838)
chr4 (103-158)||(34284071-34284126)
chr4 (97-154)||(35381577-35381634)
chr4 (98-159)||(50623440-50623501)
chr4 (119-159)||(40411990-40412030)
chr4 (95-159)||(44069054-44069118)
chr4 (99-159)||(45725563-45725623)
chr4 (95-159)||(47428552-47428616)
chr4 (95-159)||(53599943-53600007)
chr4 (95-159)||(56576260-56576324)
[»] chr6 (5 HSPs)
chr6 (95-169)||(847816-847890)
chr6 (99-159)||(1252189-1252249)
chr6 (120-159)||(24356211-24356250)
chr6 (119-153)||(21887748-21887782)
chr6 (119-159)||(879308-879348)
[»] chr5 (8 HSPs)
chr5 (97-159)||(6007887-6007949)
chr5 (120-159)||(5119205-5119244)
chr5 (97-159)||(4985328-4985390)
chr5 (97-159)||(10359388-10359450)
chr5 (97-159)||(14793943-14794005)
chr5 (95-159)||(9076073-9076137)
chr5 (95-159)||(31802790-31802854)
chr5 (95-143)||(40927155-40927203)
[»] chr1 (7 HSPs)
chr1 (97-159)||(32168465-32168527)
chr1 (97-159)||(36318375-36318437)
chr1 (120-169)||(51613456-51613505)
chr1 (95-143)||(8973620-8973668)
chr1 (119-159)||(44818498-44818538)
chr1 (109-169)||(49756665-49756725)
chr1 (95-159)||(49908335-49908399)
[»] scaffold0280 (1 HSPs)
scaffold0280 (97-159)||(8176-8238)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 17213502 - 17213335
Alignment:
Q  16 agacacatatctacccgtgtcatgggaactttcgggtacacagttttcttgcctgaaatatctgtcgtttttgcaaacgaattttgtttctatttatttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17213502 agacacatatctacccgtgtcatgggaactttcgggtacacagttttcttgcctgaaatatctgtcgtttttgcaaacgaattttgtttctatttatttg 17213403  T
Q  116 tagttttcaaagttcaatgcatcattaactattgttttatcaatcatactcttatcttttattgcaat 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17213402 tagttttcaaagttcaatgcatcattaactattgttttatcaatcatactcttatcttttattgcaat 17213335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 10562510 - 10562442
Alignment:
Q  96 attttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatac 164  Q
    ||||||||||||||||||||| |||||||| ||||||| || ||||||| ||| |||| ||||| ||||    
T  10562510 attttgtttctatttatttgtcgttttcaatgttcaatacaacattaacaatttttttgtcaataatac 10562442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 13849913 - 13849874
Alignment:
Q  120 tttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  13849913 tttcaaagttcaatgcatcattaaatgttgttttatcaat 13849874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 32323677 - 32323736
Alignment:
Q  99 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaa 158  Q
    ||||| || ||||||||| ||||||||||||||||||| ||| || ||||||||| ||||    
T  32323677 ttgttcctctttatttgtcgttttcaaagttcaatgcaacatcaattattgttttgtcaa 32323736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 32901114 - 32901176
Alignment:
Q  106 tatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctt 168  Q
    |||||| |||| ||||||||||||||||||| |||||| |  || ||||||||| ||||||||    
T  32901114 tatttagttgttgttttcaaagttcaatgcaacattaattgatgatttatcaataatactctt 32901176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 37116791 - 37116742
Alignment:
Q  120 tttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 169  Q
    ||||||||||||||||| |||||| | |||||||||||||| ||| ||||    
T  37116791 tttcaaagttcaatgcaacattaaatgttgttttatcaatcttaccctta 37116742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 479196 - 479132
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  479196 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatgttgttttatcaat 479132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 15677514 - 15677450
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| |||| ||||||||||    
T  15677514 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatattattttatcaat 15677450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 3035636 - 3035581
Alignment:
Q  98 tttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgtttt 153  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||    
T  3035636 tttgtttctatttatttgtcgttttcaaagttcaatgcaacattaaatattgtttt 3035581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 34266662 - 34266600
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||  |||||||||||||||||| |||||| | |||||||||||||    
T  34266662 ttttgtttctatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttatcaat 34266600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 44874020 - 44873956
Alignment:
Q  96 attttgtttctatttatttgta-gttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||||||| ||||| |||| ||||||   ||||||||||||||| ||||||    
T  44874020 attttgtttctatttatttgtacgtttttaaaggtcaatgggacattaactattgtttaatcaat 44873956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 29698013 - 29698075
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||| ||||||| ||||  ||||||||||||||||||  ||||| | |||||||||||||    
T  29698013 ttttgttcctatttaattgtcattttcaaagttcaatgcaatattaaatgttgttttatcaat 29698075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 34750675 - 34750723
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 143  Q
    ||||||||||||| |||  ||| ||||||||||||||||| ||||||||    
T  34750675 aattttgtttctaattaactgtcgttttcaaagttcaatgtatcattaa 34750723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 38238939 - 38238994
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttt 152  Q
    ||||||||||||| ||||||  |||||||||||||||||| |||||||||||||||    
T  38238939 ttttgtttctattcatttgtcattttcaaagttcaatgcaacattaactattgttt 38238994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 9706639 - 9706708
Alignment:
Q  94 gaattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatac 164  Q
    |||||||||||||||||| |||   |||||||| ||||||||| |||||||||||||||| ||||||||||    
T  9706639 gaattttgtttctatttacttgccattttcaaatttcaatgcaccattaactattgtttt-tcaatcatac 9706708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11060999 - 11061061
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||| |||||||||||| ||||||||||||||||| |  ||||| ||||||||| |||||    
T  11060999 ttttgttcctatttatttgtcgttttcaaagttcaatgtaatattaattattgttttgtcaat 11061061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 26628856 - 26628930
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 169  Q
    |||||||||||  |||||||||  |||||||  ||||||||| |||||| ||||| ||||||||| |||| ||||    
T  26628856 aattttgtttcactttatttgtcattttcaagtttcaatgcaacattaattattgatttatcaataataccctta 26628930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 34046873 - 34046935
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||   ||||||||||||||||| |||||| |||||||||| ||||    
T  34046873 ttttgtttctatttaactgtcactttcaaagttcaatgcaacattaaatattgttttaccaat 34046935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 35593734 - 35593693
Alignment:
Q  111 atttgtagttttcaaagttcaatgcatcattaactattgtttt 153  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  35593734 atttgtagttttcaa-gttcaatgcaacattaactattgtttt 35593693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 33751244 - 33751289
Alignment:
Q  119 ttttcaaagttcaatgcatcattaactattgttttatcaatcatac 164  Q
    ||||||||||||||||||  ||||| ||||||||||||||| ||||    
T  33751244 ttttcaaagttcaatgcaatattaattattgttttatcaataatac 33751289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 46392660 - 46392609
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaacta 146  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  46392660 aattttgttcctatttatttgtcgttttcaaagttcaatgcaacattaacta 46392609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 6737318 - 6737258
Alignment:
Q  104 tctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatac 164  Q
    ||||||||||| |  ||||||||||||||||||  ||||| ||||||||||||||| ||||    
T  6737318 tctatttatttatcattttcaaagttcaatgcaatattaattattgttttatcaataatac 6737258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 32049433 - 32049481
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 143  Q
    ||||||||||||| ||| |||| ||||||||||||||||| ||||||||    
T  32049433 aattttgtttctaattaattgtcgttttcaaagttcaatgtatcattaa 32049481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 41480712 - 41480638
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 169  Q
    ||||||||| ||||| | ||||  |||| |||||||||||||  ||||||||||||||| ||||| |||| ||||    
T  41480712 aattttgttcctattaagttgtcattttgaaagttcaatgcaatattaactattgttttgtcaataataccctta 41480638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 44820816 - 44820756
Alignment:
Q  99 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||  |||  |||| ||||||||||||| |||||| || ||||||||||||    
T  44820816 ttgtttctatttaactgttatttttaaagttcaatgcaacattaaataatgttttatcaat 44820756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 9840471 - 9840410
Alignment:
Q  98 tttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||| ||||||||||||  ||||||||| |||||||| |||||||||||||||| |||||    
T  9840471 tttgttcctatttatttgtctttttcaaagctcaatgcaacattaactattgttttgtcaat 9840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 47596832 - 47596760
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 169  Q
    ||||||||||||||| ||||  ||||||||||||||||||  ||| | |||||||||||||||  ||||||||    
T  47596832 ttttgtttctatttaattgtcattttcaaagttcaatgcaatattgagtattgttttatcaatattactctta 47596760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 36408748 - 36408810
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||| ||||||| ||||| |||||||||||||||||| |||||| | |||||||| ||||    
T  36408748 ttttgttcctatttaattgtaattttcaaagttcaatgcaacattaaatgttgttttaacaat 36408810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 36422914 - 36422976
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||| ||||||| ||||| |||||||||||||||||| |||||| | |||||||| ||||    
T  36422914 ttttgttcctatttaattgtaattttcaaagttcaatgcaacattaaatgttgttttaacaat 36422976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 25396126 - 25396065
Alignment:
Q  106 tatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactct 167  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||||||| || || |||||||    
T  25396126 tatttatttgtcgttttccaagttcaatgcagaattaactattgttttgtcgataatactct 25396065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 8735412 - 8735476
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||||||||||| ||||   |||||||||||||||||  ||||| |||||||||| ||||    
T  8735412 aattttgtttctatttaattgtcactttcaaagttcaatgcaatattaaatattgttttaccaat 8735476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 39683935 - 39683871
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||  |||   ||| ||||||||||||| |||||| |||||||||||||||    
T  39683935 aattttgtttctatttaactgtcacttttaaagttcaatgcaacattaaatattgttttatcaat 39683871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 51978838 - 51978794
Alignment:
Q  108 tttatttgtagttttcaaagttcaatgcatcattaactattgttt 152  Q
    |||||||||  |||||||||||||||||| |||||||||||||||    
T  51978838 tttatttgtcattttcaaagttcaatgcaacattaactattgttt 51978794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 34284071 - 34284126
Alignment:
Q  103 ttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaa 158  Q
    |||||||||  ||| ||||||||||||||||||| ||||| |||||||||| ||||    
T  34284071 ttctatttacgtgtcgttttcaaagttcaatgcaacattatctattgttttctcaa 34284126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 35381634 - 35381577
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgtttta 154  Q
    ||||||||||||||| ||||   ||||||||||||||||| |||||| | ||||||||    
T  35381634 ttttgtttctatttaattgtcactttcaaagttcaatgcaacattaaatgttgtttta 35381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 50623440 - 50623501
Alignment:
Q  98 tttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||| ||||   ||||||||||||||||| |||||| | |||||||| ||||    
T  50623440 tttgtttctatttaattgtcactttcaaagttcaatgcaacattaaatgttgttttaccaat 50623501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 40411990 - 40412030
Alignment:
Q  119 ttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||| | |||||| |||||||||||||||    
T  40411990 ttttcaaagttcaatgtaacattaaatattgttttatcaat 40412030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 44069054 - 44069118
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  44069054 aattttgttcctatttaagtgtcactttcaaagttcaatgcaacattaaatgttgttttatcaat 44069118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 45725563 - 45725623
Alignment:
Q  99 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||||||| ||||  |||| |||||||||||||  ||||| |||| ||||||||||    
T  45725563 ttgtttctatttaattgtcatttttaaagttcaatgcaatattaaatattattttatcaat 45725623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 47428552 - 47428616
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||| |||||||  ||| | ||||||||||||||||| |||||| | |||||||| ||||    
T  47428552 aattttgttcctatttaactgtcgctttcaaagttcaatgcaacattaaatgttgttttaccaat 47428616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 53600007 - 53599943
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| |||||||||| ||||    
T  53600007 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatattgttttaccaat 53599943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 56576324 - 56576260
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| |||||||||| ||||    
T  56576324 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatattgttttaccaat 56576260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 847816 - 847890
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 169  Q
    |||| |||| ||||||| ||||  |||||||||||||||||| |||||| ||||| ||| ||||| |||||||||    
T  847816 aattgtgttcctatttacttgtcattttcaaagttcaatgcaacattaattattgctttgtcaataatactctta 847890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 1252189 - 1252249
Alignment:
Q  99 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||| ||||||| ||||  |||||||||||||||||| |||||| |||||||||| ||||    
T  1252189 ttgttcctatttaattgtctttttcaaagttcaatgcaacattaaatattgttttaccaat 1252249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 24356250 - 24356211
Alignment:
Q  120 tttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  24356250 tttcaaagttcaatgcatcattaaatgttgttttatcaat 24356211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 21887782 - 21887748
Alignment:
Q  119 ttttcaaagttcaatgcatcattaactattgtttt 153  Q
    |||||||||||||||||| ||||||||||||||||    
T  21887782 ttttcaaagttcaatgcaacattaactattgtttt 21887748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 879308 - 879348
Alignment:
Q  119 ttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||| |||||| ||||||||| |||||    
T  879308 ttttcaaagttcaatgcaacattaattattgttttgtcaat 879348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 6007887 - 6007949
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||   |||||||||||||||||||||||| | |||||||||||||    
T  6007887 ttttgtttctatttaactgtcactttcaaagttcaatgcatcattaaatgttgttttatcaat 6007949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 5119205 - 5119244
Alignment:
Q  120 tttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  5119205 tttcaaagttcaatgcatcattaaatattgttttaccaat 5119244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 4985390 - 4985328
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||   ||||||||||||||||| |||||| || ||||||||||||    
T  4985390 ttttgtttctatttaactgtcactttcaaagttcaatgcaacattaaataatgttttatcaat 4985328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 10359450 - 10359388
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||  |||||||||||||||||| |||||| | |||||||| ||||    
T  10359450 ttttgtttctatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttaccaat 10359388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 14794005 - 14793943
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  14794005 ttttgtttctatttaaatgttactttcaaagttcaatgcaacattaaatgttgttttatcaat 14793943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 9076073 - 9076137
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  9076073 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatgttgttttatcaat 9076137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 31802790 - 31802854
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    ||||||||||| |||||  |||  |||||||||||||||||| |||||| | |||||||| ||||    
T  31802790 aattttgtttcaatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttaccaat 31802854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 40927155 - 40927203
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 143  Q
    ||||||||||||| ||| |||| ||||||||| ||||||| ||||||||    
T  40927155 aattttgtttctaattaattgtcgttttcaaaattcaatgtatcattaa 40927203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 32168527 - 32168465
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||   |||||||||||||||||||||||| | |||||||||||||    
T  32168527 ttttgtttctatttaactgtcagtttcaaagttcaatgcatcattaaatgttgttttatcaat 32168465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 36318375 - 36318437
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  ||| | ||||||||||||||||| |||||| | |||||||||||||    
T  36318375 ttttgtttctatttaactgtcgctttcaaagttcaatgcaacattaaatgttgttttatcaat 36318437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 51613456 - 51613505
Alignment:
Q  120 tttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 169  Q
    |||||||||||||||||||||||| | |||||||||||||  ||||||||    
T  51613456 tttcaaagttcaatgcatcattaaatgttgttttatcaatattactctta 51613505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 8973668 - 8973620
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 143  Q
    ||||||||||||| |||  ||| ||||||||||||||||| ||||||||    
T  8973668 aattttgtttctaattaactgttgttttcaaagttcaatgtatcattaa 8973620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 44818498 - 44818538
Alignment:
Q  119 ttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||| |||||| |||||||||| ||||    
T  44818498 ttttcaaagttcaatgcaacattaaatattgttttaccaat 44818538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 49756665 - 49756725
Alignment:
Q  109 ttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 169  Q
    |||||||| ||| ||||||||||||||| || ||| ||||||||| ||||| |||| ||||    
T  49756665 ttatttgttgttgtcaaagttcaatgcaacaataattattgttttgtcaattataccctta 49756725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 49908399 - 49908335
Alignment:
Q  95 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||||  |||   ||| ||||||||||||| |||||| |||||||||| ||||    
T  49908399 aattttgtttctatttaactgtcacttttaaagttcaatgcaacattaaatattgttttaccaat 49908335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 8176 - 8238
Alignment:
Q  97 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 159  Q
    |||||||||||||||  |||  |||||||||||||||||| |||||| | |||||||| ||||    
T  8176 ttttgtttctatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttaccaat 8238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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