View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1121_low_8 (Length: 542)
Name: NF1121_low_8
Description: NF1121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1121_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 107 - 515
Target Start/End: Complemental strand, 4149710 - 4149302
Alignment:
| Q |
107 |
gagtttataaacgaaatgtataacaatccagttatacatatgctcatgagagctgagtatatagctgataaggtgaatgagtgggagttgaagaagaatg |
206 |
Q |
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| T |
4149710 |
gagtttatgaacgaaatgtataacaatccaattatacatatgctcatgagatatgagtatatagctgataaggtgaatgagtgggagttgaagaagaatg |
4149611 |
T |
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| Q |
207 |
agaaacctcgtaagcctgaagatagagagctttggaagaaagtgcccaatattattgggcttgatgggaggcctatgccgagaaaagcgcagtcacggta |
306 |
Q |
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| T |
4149610 |
agaaacctcgtaagcctgaagatagagagcattggaagaaagtgcctaatattattgggcttgatgggaggcctatgccgagaaaagcgcagtcacggta |
4149511 |
T |
|
| Q |
307 |
tgcagcgcaagataagttttgggattttgctagacaattttatttggggatttgggggttttggcaaaggccttatcctcctgggaagccgattgatgtt |
406 |
Q |
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| T |
4149510 |
tgcagcgcaagataagttttgggattttgctagacaattttatttggggatttgggggttttggcaaaggccttatcctcctgggaagccgattgatgtt |
4149411 |
T |
|
| Q |
407 |
gctcaagctattgggtataacactctcgagaatcgatactatgattgtaagttttttgataattgagttatttctggttgttgttgttgcatttggctta |
506 |
Q |
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| T |
4149410 |
gctcaagctattgggtataacactctcgagaatcgatactatgaatgtaagttttttcataattgagttatttctggttgttgttgttgcatctggctta |
4149311 |
T |
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| Q |
507 |
catattttg |
515 |
Q |
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| T |
4149310 |
cagattttg |
4149302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 4149808 - 4149775
Alignment:
| Q |
9 |
accacagacacacaccacaagtcaacaaactcct |
42 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
4149808 |
accacagacacacaccacaagtcaacaaagtcct |
4149775 |
T |
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