View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11220_high_13 (Length: 324)
Name: NF11220_high_13
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 25703952 - 25704275
Alignment:
| Q |
1 |
ttattacagaggacacgtggtggggggaccgtgaaccggttgaaccggtaaattgttgaaactgaaaatagaata----------tgaggcacgtaatgt |
90 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
25703952 |
ttattagagaggacacgtggtggggggaccgtgaaccggttgaaccggtaa-ttgttgaaactgaaaatagaatagaatagtatatgagtcacgtaatgt |
25704050 |
T |
|
| Q |
91 |
tttgagtagagtgcgtgnnnnnnngtattctcgaaagtgagaatgcgatttgtgaattgggattgttatgtttgacttctatgaattttctatatacaca |
190 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25704051 |
tttgagtagagtgcgtgtttttttgtattctcgaaagtgagaatgcgatttgtgaattgggattgttatgtttgacttctatgaattttctatataca-- |
25704148 |
T |
|
| Q |
191 |
atggagttaaggaaaggaaagggttgtgtaatgtatttgaccttctataacatcgtcaaaattgcacttttcagcttattcataacgatgttaattaacg |
290 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25704149 |
atgaagttaaggaaaggaaagggttgtgtaatgtatttgaccttctataacatcgtcaaaattgcacttttcagcttattcataacgatgttaattaacg |
25704248 |
T |
|
| Q |
291 |
cgccttgtaacttattgtggtcctatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
25704249 |
cgccttgtaacttattgtggtcctatg |
25704275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University