View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11220_high_2 (Length: 676)
Name: NF11220_high_2
Description: NF11220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11220_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 7 - 657
Target Start/End: Original strand, 42802415 - 42803064
Alignment:
| Q |
7 |
gagatgaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccc |
106 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42802415 |
gagaagaagaagaacaatactgatgcatcctcctcctcgatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccc |
42802514 |
T |
|
| Q |
107 |
cctcccctccccttcctttttattattaggtctgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
42802515 |
cctcccctccccttcctttttattattaggtctgtctatgtccatgtaagtagtaattatctcaaatgtcccaaaatgaggttggcattaagagtagtct |
42802614 |
T |
|
| Q |
207 |
aatcagagctctcaattgaagaatatgtatcttttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagaga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42802615 |
aatcagagctctcaattgaagaatatgtatcttttcagtttcaacaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagaga |
42802714 |
T |
|
| Q |
307 |
ttctcttgagtgtaggtttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42802715 |
ttctcttgagtgtaggtttggtatcactatggcgtgtcacaattatggtgatccatcgtgatttttcgaaaaatacacttataacttctgcaaaatcaat |
42802814 |
T |
|
| Q |
407 |
taaaatgagtcaccgtgattctagtatactcatgtaagttaagcaacgcaagggttcgctttttacctaagatcaaactttctttttcatttcaacaagg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42802815 |
taaaatgagtcaccgtgattctagtatacccatgtaagttaagcaacgcaagggttcgctttttacctaaaatcaaactttctttttcatttcaacaagg |
42802914 |
T |
|
| Q |
507 |
taggtgctttatttgacagagcaaaattggctagatggatggaaagcacacnnnnnnntaacactacatttgaaaacatagacaatggtgtaaacaaagt |
606 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42802915 |
ta-gtgctttcgttgacagagcaaaattggctagatggatggaaagcacacaaaaaaataacactacatttgaaaacatagacaatggtgtaaacaaagt |
42803013 |
T |
|
| Q |
607 |
tcttaacagaacttatcacaatgattaggaaaatacatttgaataccactt |
657 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
42803014 |
tcttaacagaacttatcataatgattgggaaaatacatttgaataccactt |
42803064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 139 - 652
Target Start/End: Complemental strand, 25514990 - 25514458
Alignment:
| Q |
139 |
tgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta-----atcagagctctcaattgaagaatatg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
25514990 |
tgtctatgtctatgtaagtagtaattatctcaaatgtcccaagatgaggtcggcattaagagtagtctagtctaatccgagctctcaattgaagagtatg |
25514891 |
T |
|
| Q |
234 |
tatctt------ttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt---- |
323 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |
|
|
| T |
25514890 |
tatcttagtattttcagtttcaagaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttaagtgtatgtatgc |
25514791 |
T |
|
| Q |
324 |
ttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
423 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25514790 |
atggtatcactgtggtgtgtcacaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
25514691 |
T |
|
| Q |
424 |
attctagtatactcatgtaagttaagcaacgcaagggttcgctttttacctaagatcaaactttctttttcatttcaacaaggtaggtgctttatttgac |
523 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
25514690 |
attctagcatacccatgtaagttaagcaacgcaagggttagctttttacctaaaagcaaactttctttttcatttcagcaaggtaggtgctttctttgac |
25514591 |
T |
|
| Q |
524 |
agagcaaaattggctagatggatggaaagcac----acnnnnnnntaacactacatttgaaaacatagacaatggtgtaaacaaagttcttaacagaact |
619 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
25514590 |
agagcaaaagtggctagatggatggaaagcacaaaaaaataaaaataacactacatttgcgaacatagacaatgatgtaagcaaagttcttaacagagat |
25514491 |
T |
|
| Q |
620 |
tatcacaatgattaggaaaatacatttgaatac |
652 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
25514490 |
tatcacaatgattgggaaaatacatttgaatac |
25514458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 73 - 652
Target Start/End: Original strand, 25520303 - 25520917
Alignment:
| Q |
73 |
ctcccatcctcttttggaaatgcttaatccaccccctcccctcccctt---------cctttttattattaggtctgtctatgtctat------gtaagt |
157 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||||| | || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25520303 |
ctcccatcctctcttggaaatgtttaatccaccccatccccttcgttttggagtctccctttttattattaggtctgtctatgtctatttctatgtaagt |
25520402 |
T |
|
| Q |
158 |
agtaattatctcaaatgtctcaaaatgaggtcggcattaagagta-----gtctaatcagagctctcaattgaagaatatgtatctt------ttcagtt |
246 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
25520403 |
agtaattatctcaaatgtcctaaaatgaggtcggcattaagagtaatctagtctaatctgagctctcaattgaagggtatgtatcttagtattttcagtt |
25520502 |
T |
|
| Q |
247 |
tcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggtttg----gtatcactatggcgtg |
342 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || || || |||||||| ||| ||| |
|
|
| T |
25520503 |
tcaagaatgtaatctaagaatcaaaatgaaaattctatatttttccctccttttaagagattctcttaagtatatgtatgcatggtatcactgtggtgtg |
25520602 |
T |
|
| Q |
343 |
tcgcaatcatggtgatccatcgtgatttttcaaaa-aatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtatactcatgt |
441 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
25520603 |
tcacaatcatggtgatccatcgtgatttttcaaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagcatacccatgt |
25520702 |
T |
|
| Q |
442 |
aagttaagcaacgcaagggttcgctttttacctaagatcaaactttctttttcatttcaacaaggtaggtgctttatttgacagagcaaaattggctaga |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||| || ||||||| |||||||| |
|
|
| T |
25520703 |
aagttaagcaacgcaagggttcgctttttacctaaaagcaaactttctttttcatttcatcaaggtaggtgctttctttggcatagcaaaagtggctaga |
25520802 |
T |
|
| Q |
542 |
tggatggaaagcac----acnnnnnnntaacactacatttgaaaacatagacaatggtgtaaacaaagttcttaacagaacttatcacaatgattaggaa |
637 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||| |
|
|
| T |
25520803 |
tggatggaaagcaccaaaaaataaaaataacactacatttgcgaacatagacaatgatgtaagcaaagttcttaacagagattatcacaatgattgggaa |
25520902 |
T |
|
| Q |
638 |
aatacatttgaatac |
652 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25520903 |
aatacatttgaatac |
25520917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 28307914 - 28307856
Alignment:
| Q |
347 |
aatcatggtgatccatcgtgatttttcaaaaaataca-cttataacttctgcaaaatca |
404 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||| ||||||||||| |||||||| |
|
|
| T |
28307914 |
aatcatagtgatccatcgtgattttttaaaaactacattttataacttctacaaaatca |
28307856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 7e-51; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 398 - 552
Target Start/End: Original strand, 49316 - 49470
Alignment:
| Q |
398 |
aaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaagcaacgcaagggttcgctttttacctaagatcaaactttctttttcatt |
497 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||| ||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
49316 |
aaaatcaattaaaatgagtcactgtgattctaacatatccatgtaagttaagcaaccaaaggattctctttttacctaaaagcaaactttctttttcatt |
49415 |
T |
|
| Q |
498 |
tcaacaaggtaggtgctttatttgacagagcaaaattggctagatggatggaaag |
552 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49416 |
tcaacaaggtaggtgctttctttgacagagcaaaagtggctagatggatggaaag |
49470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 49093 - 49267
Alignment:
| Q |
143 |
tatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtctaatcagag----ctctcaattgaagaatatgtatc- |
237 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
49093 |
tatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctctcaattgaagagtatgtatct |
49192 |
T |
|
| Q |
238 |
--------ttttc----agtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctcctttt |
300 |
Q |
| |
|
||||| | |||||||||||| ||||||||||| ||||||||||||| |||||| | |||||||| |
|
|
| T |
49193 |
tagtattattttcggttaatttcaacaatgtaatctaagaatccaaatgaaaattctttattttccgctcctttt |
49267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 48972 - 49035
Alignment:
| Q |
51 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccct |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48972 |
aaatgaagacagcagtaagtcactcccatcctcttttggaaatgcttaatacaccccctcccct |
49035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 25851757 - 25851705
Alignment:
| Q |
51 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatcca |
103 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25851757 |
aaatgaagacatcagtaactcactcccttcctcttttggaaatgcttaatcca |
25851705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 25851612 - 25851651
Alignment:
| Q |
55 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25851612 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
25851651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 25851817 - 25851772
Alignment:
| Q |
12 |
gaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaa |
57 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25851817 |
gaagaagaacaatactgatgcatcctcctcctaaatcacaaatgaa |
25851772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 25851548 - 25851593
Alignment:
| Q |
12 |
gaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaa |
57 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
25851548 |
gaagaagaacaatattgatgcatcatcctcctcaatcacagatgaa |
25851593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 610 - 657
Target Start/End: Original strand, 27906708 - 27906755
Alignment:
| Q |
610 |
taacagaacttatcacaatgattaggaaaatacatttgaataccactt |
657 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
27906708 |
taacagaacttatcacaatgattggtaaaatacatttgaataccactt |
27906755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 655
Target Start/End: Complemental strand, 7387852 - 7387807
Alignment:
| Q |
610 |
taacagaacttatcacaatgattaggaaaatacatttgaataccac |
655 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
7387852 |
taacagaacttatcacaatgactggtaaaatacatttgaataccac |
7387807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 5277048 - 5277009
Alignment:
| Q |
347 |
aatcatggtgatccatcgtgatttttcaaaaaatacactt |
386 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
5277048 |
aatcatggtgatctatcatgatttttcaaaaaatacactt |
5277009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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